View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2533_low_13 (Length: 252)
Name: NF2533_low_13
Description: NF2533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2533_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 7727225 - 7726979
Alignment:
| Q |
1 |
ctacaaaaacttgaccttggttccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttacaggagtttgatttatctaacaacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7727225 |
ctacaaaaacttgaccttggttccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttacaggagtttgatttgtctaacaacc |
7727126 |
T |
|
| Q |
101 |
agttatccggtgttattcccgcgtcgttcggctccataccgtccctttcgcagtttaacgtcagctttaaccagctgtgtggtgcgatccctactggact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||| | |
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| T |
7727125 |
agttatccggtgttattcccgcgtcgttcggctccataccgtctctttcgcagtttaatgtcagctttaaccaactgtgtggtgcgatacctactgggtt |
7727026 |
T |
|
| Q |
201 |
gaacaagtttgcgaagagttcgtttgatcataataaatgcctctgtg |
247 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
7727025 |
gaacaagtttgcaaagagttcgtttgatcataataaatgcctttgtg |
7726979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 7731385 - 7731139
Alignment:
| Q |
1 |
ctacaaaaacttgaccttggttccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttacaggagtttgatttatctaacaacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7731385 |
ctacaaaaacttgaccttggttccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttacaggagtttgatttgtctaacaacc |
7731286 |
T |
|
| Q |
101 |
agttatccggtgttattcccgcgtcgttcggctccataccgtccctttcgcagtttaacgtcagctttaaccagctgtgtggtgcgatccctactggact |
200 |
Q |
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| T |
7731285 |
agttatccggtgttattccggcgtcgttcggctccataccgtctctttcgcagtttaatgtcagctttaaccaactgtgtggtgctatccctactggatt |
7731186 |
T |
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| Q |
201 |
gaacaagtttgcgaagagttcgtttgatcataataaatgcctctgtg |
247 |
Q |
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|| ||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
7731185 |
gagcaagtttgcaaagagttcgtttgatcataataaatgcctttgtg |
7731139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 7739543 - 7739297
Alignment:
| Q |
1 |
ctacaaaaacttgaccttggttccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttacaggagtttgatttatctaacaacc |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7739543 |
ctacaaaaactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccagttgaagggcttacaggagtttgatttgtctaacaata |
7739444 |
T |
|
| Q |
101 |
agttatccggtgttattcccgcgtcgttcggctccataccgtccctttcgcagtttaacgtcagctttaaccagctgtgtggtgcgatccctactggact |
200 |
Q |
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||||| ||||||||||||| ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| | |
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| T |
7739443 |
agttaaccggtgttattccggcgtcgttcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgctatccctactggatt |
7739344 |
T |
|
| Q |
201 |
gaacaagtttgcgaagagttcgtttgatcataataaatgcctctgtg |
247 |
Q |
| |
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|| ||| ||||| ||||||||||||||||||||||||||||| |||| |
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| T |
7739343 |
gagcaaatttgcaaagagttcgtttgatcataataaatgcctttgtg |
7739297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 7713696 - 7713462
Alignment:
| Q |
13 |
gaccttggttccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttacaggagtttgatttatctaacaaccagttatccggtg |
112 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||| ||||| ||| |||||||| || | || ||| ||||||| || |||||| |||||||||||| |
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| T |
7713696 |
gaccttggctccaacagccttagtgggccaatccctgaatttctgggcaagttgaagcgcctccaagaggttgatttgtccaacaacaagttatccggtg |
7713597 |
T |
|
| Q |
113 |
ttattcccgcgtcgttcggctccataccgtccctttcgcagtttaacgtcagctttaaccagctgtgtggtgcgatccctactggactgaacaagtttgc |
212 |
Q |
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|||||| |||||| ||| | | ||| ||| ||||||||||| || || |||||||||||||| |||||||||||||||||||| ||| ||||||||| |
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| T |
7713596 |
ctattccggcgtcgctcgacaacctacagtctctttcgcagttcaatgttagctttaaccagctctgtggtgcgatccctactgggttgagcaagtttgc |
7713497 |
T |
|
| Q |
213 |
gaagagttcgtttgatcataataaatgcctctgtg |
247 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| |
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| T |
7713496 |
aaagagttcgtttgagcataataaatgcctttgtg |
7713462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 7699363 - 7699117
Alignment:
| Q |
1 |
ctacaaaaacttgaccttggttccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttacaggagtttgatttatctaacaacc |
100 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||||||| |||||| | ||||||||| |||||||| || || ||||| ||||||| ||||||||| |
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| T |
7699363 |
ctacaaaatctagaccttggttccaacagccttagtgggccaatcccctcctttctaggcaagttgaagcgcctaaaggaggttgatttgtctaacaaca |
7699264 |
T |
|
| Q |
101 |
agttatccggtgttattcccgcgtcgttcggctccataccgtccctttcgcagtttaacgtcagctttaaccagctgtgtggtgcgatccctactggact |
200 |
Q |
| |
|
|||||||||| |||||| ||||| ||||| | ||| || |||||||||||||| || |||||||||||||| |||||||| || ||| |||| | |
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| T |
7699263 |
agttatccggcactattccggcgtcactcggcaacctacaatctctttcgcagtttaatgttagctttaaccagctctgtggtgcaattcctgctgggtt |
7699164 |
T |
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| Q |
201 |
gaacaagtttgcgaagagttcgtttgatcataataaatgcctctgtg |
247 |
Q |
| |
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||| |||||| |||| | |||||| |||||||||||||| |||| |
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| T |
7699163 |
gaagaagtttaacaagaatgtgtttgagcataataaatgcctttgtg |
7699117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 12908132 - 12908357
Alignment:
| Q |
22 |
tccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttacaggagtttgatttatctaacaaccagttatccggtgttattcccg |
121 |
Q |
| |
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||||||| |||||||| ||||||||||| || ||||||| ||||||| ||||| | ||| ||||||| ||||||||| ||||||||||||||||||| | |
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| T |
12908132 |
tccaacaaccttagtggcccgatccccaccttcctaggccggttgaagcgcttagaagaggttgatttgtctaacaacaagttatccggtgttattccag |
12908231 |
T |
|
| Q |
122 |
cgtcgttcggctccataccgtccctttcgcagtttaacgtcagctttaaccagctgtgtggtgcgatccctactggactgaacaagtttgcgaagagttc |
221 |
Q |
| |
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||||| ||| | || ||||||| || || ||||| || || |||| |||||| |||||||||||||| |||||||| |||| ||||| | ||||||| |
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| T |
12908232 |
cgtcgctcgccaccctaccgtctctctcccagttgaatgttagctctaaccatctgtgtggtgcgatacctactgggttgaagaagttggagaagagtat |
12908331 |
T |
|
| Q |
222 |
gtttgatcataataaatgcctctgtg |
247 |
Q |
| |
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|||||| |||||||||||||| |||| |
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|
| T |
12908332 |
gtttgagcataataaatgcctttgtg |
12908357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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