View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2533_low_15 (Length: 249)
Name: NF2533_low_15
Description: NF2533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2533_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 35201109 - 35200872
Alignment:
| Q |
13 |
aatataagacaattgcatggaccttttacagataaacatacgtatatattaggtaataaagatggtttctctattaagatagtatttattcataaaggga |
112 |
Q |
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| T |
35201109 |
aatataagacaattgcatggaccttttacagataaacatacgtatatattaggtaataaagatggtttctctattaagatagtatttattcataaaggga |
35201010 |
T |
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| Q |
113 |
gagacaaattaacagaagtatataatgataaac-nnnnnnnnnnnnntgaaacaagaacaatcaatatgtttatatgatgtactaaaagttccaaatgaa |
211 |
Q |
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| T |
35201009 |
gagacaaattaacagaagtatataatgataaacaaaaataaaaaaaatgaaacaagaacaatcaatatgtttatatgatgtactaaaagttccaaatgaa |
35200910 |
T |
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| Q |
212 |
agggacaaaaaaccaccatgtggctctttacatctcaa |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
35200909 |
agggacaaaaaaccaccatgtggctctttacatctcaa |
35200872 |
T |
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