View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2533_low_16 (Length: 238)
Name: NF2533_low_16
Description: NF2533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2533_low_16 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 7727423 - 7727203
Alignment:
| Q |
18 |
tgtagcgactggagctttgtcgggtgcggcaaacctgcacctggccgagtcaccgttgtcaccataagccgtggctggggtctttcgggtacgcttccag |
117 |
Q |
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| T |
7727423 |
tgtagcgactggagcttcgtcgggtgtggcaaacccctacctggccgaatcaccgtcgtcaccatcagccgtggctggggtctttctggtacgcttccag |
7727324 |
T |
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| Q |
118 |
cagagtttggcgacctcccttatcttaacttcctctcattggctgaaatgcccaaagtaactggaccaatccctaactctttcagcaaactcaaaagact |
217 |
Q |
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| T |
7727323 |
cagagtttggcgacctcccatatcttaacttcctctcattggctgaaatgcccaaagtaaccggaccaatccctaactctttcagcaaactcaaaagact |
7727224 |
T |
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| Q |
218 |
acaaaaacttgaccttggttc |
238 |
Q |
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||||||||||||||||||||| |
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| T |
7727223 |
acaaaaacttgaccttggttc |
7727203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 7731583 - 7731363
Alignment:
| Q |
18 |
tgtagcgactggagctttgtcgggtgcggcaaacctgcacctggccgagtcaccgttgtcaccataagccgtggctggggtctttcgggtacgcttccag |
117 |
Q |
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||||||||||||||||| |||||||| || ||||| |||||||||| ||||||| |||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
7731583 |
tgtagcgactggagcttcgtcgggtgtggtaaacccctacctggccgaatcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccag |
7731484 |
T |
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| Q |
118 |
cagagtttggcgacctcccttatcttaacttcctctcattggctgaaatgcccaaagtaactggaccaatccctaactctttcagcaaactcaaaagact |
217 |
Q |
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| T |
7731483 |
tagagtttggcgacctcccttatcttaacttcctctcattagccgaaatgccgaaagtaactgggccaatccctaactcttttagcaaactcaaaagact |
7731384 |
T |
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| Q |
218 |
acaaaaacttgaccttggttc |
238 |
Q |
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||||||||||||||||||||| |
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| T |
7731383 |
acaaaaacttgaccttggttc |
7731363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 7739741 - 7739521
Alignment:
| Q |
18 |
tgtagcgactggagctttgtcgggtgcggcaaacctgcacctggccgagtcaccgttgtcaccataagccgtggctggggtctttcgggtacgcttccag |
117 |
Q |
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||||||||||||||||| |||||||| || ||||| |||||||||| ||||||| |||||||| |||||||||||||||||||| |||||||| |||| |
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| T |
7739741 |
tgtagcgactggagcttcgtcgggtgtggtaaacccctacctggccgaatcaccgtcgtcaccatcagccgtggctggggtctttccggtacgctaccag |
7739642 |
T |
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| Q |
118 |
cagagtttggcgacctcccttatcttaacttcctctcattggctgaaatgcccaaagtaactggaccaatccctaactctttcagcaaactcaaaagact |
217 |
Q |
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| T |
7739641 |
cggagtttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggccaattcctaactctttcagcaaactccaaagact |
7739542 |
T |
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| Q |
218 |
acaaaaacttgaccttggttc |
238 |
Q |
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||||||||| ||||||||||| |
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| T |
7739541 |
acaaaaactcgaccttggttc |
7739521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 24 - 238
Target Start/End: Complemental strand, 7699555 - 7699341
Alignment:
| Q |
24 |
gactggagctttgtcgggtgcggcaaacctgcacctggccgagtcaccgttgtcaccataagccgtggctggggtctttcgggtacgcttccagcagagt |
123 |
Q |
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||||||||||| ||||| ||||||| |||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||| |
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| T |
7699555 |
gactggagcttcgtcggttgcggcagaccttatcctggccgagtcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagcggagt |
7699456 |
T |
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| Q |
124 |
ttggcgacctcccttatcttaacttcctctcattggctgaaatgcccaaagtaactggaccaatccctaactctttcagcaaactcaaaagactacaaaa |
223 |
Q |
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| T |
7699455 |
ttggcaacctcccttatcttagcatgctctcattggccgaaatgccgaaagtaactgggccaatccctaactcttttagcaaactccaaagactacaaaa |
7699356 |
T |
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| Q |
224 |
acttgaccttggttc |
238 |
Q |
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|| ||||||||||| |
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| T |
7699355 |
tctagaccttggttc |
7699341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 235
Target Start/End: Complemental strand, 7713900 - 7713689
Alignment:
| Q |
24 |
gactggagctttgtcgggtgcggcaaacctgcacctggccgagtcaccgttgtcaccataagccgtggctggggtctttcgggtacgcttccagcagagt |
123 |
Q |
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||||||| ||| || || ||||||| |||| |||||||||||||||| |||||||| ||||||||||||||||||| ||||| |||||||| |||| |
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| T |
7713900 |
gactggaacttcgtaggttgcggcagaccttatcctggccgagtcaccggcgtcaccatcggccgtggctggggtctttccggtacacttccagcggagt |
7713801 |
T |
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| Q |
124 |
ttggcgacctcccttatcttaacttcctctcattggctgaaatgcccaaagtaactggaccaatccctaactctttcagcaaactcaaaagactacaaaa |
223 |
Q |
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| T |
7713800 |
ttggcgacctcccttatcttagcatgctctcattggccgaaatgccgaaagtaactgggccaatccctaactctttcagcaaactcaaaagactagaaaa |
7713701 |
T |
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| Q |
224 |
acttgaccttgg |
235 |
Q |
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|| |||||||| |
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| T |
7713700 |
tctcgaccttgg |
7713689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 12908070 - 12908108
Alignment:
| Q |
175 |
taactggaccaatccctaactctttcagcaaactcaaaa |
213 |
Q |
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| T |
12908070 |
taactgggccaatccctaactctttcagcaaactcaaaa |
12908108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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