View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2533_low_6 (Length: 309)
Name: NF2533_low_6
Description: NF2533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2533_low_6 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 505856 - 505573
Alignment:
| Q |
16 |
atacaatcttgtatattaatttgtgtttttaggcttaatcgcgcttttgattcttttattgataattgttcttctcccttctggttttgctcattccc-- |
113 |
Q |
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| T |
505856 |
atacaatcttgtatattaatttgtgtttttaggcttaatcgcgcttttgattcttttattgataattgttcttctcccttctgtttttgctcattctcat |
505757 |
T |
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| Q |
114 |
-----gtaagttaactcacgctnnnnnnncacacttgtctaagtttactcacgctgaaaataaaacatgtgtgagttagctcagattcagctattttaac |
208 |
Q |
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| T |
505756 |
cttttgtgagttaactcacgctaaaaaaacacacttgtctgagtttactcacgctgaaaataaaatatgtgtgagttagctcagattcaactattttgac |
505657 |
T |
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| Q |
209 |
gaaaatgagtaaaaatagatgggagaagagaagttatctcttttattttacctaaagtaaagttgttttatctgatgtgacata |
292 |
Q |
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| T |
505656 |
gaaaatgagtaaaaatagatgggagaagagaagttatctcttttattttacctaaagtaaagttgttttatctgacgtgacata |
505573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 9828179 - 9828218
Alignment:
| Q |
76 |
gataattgttcttctcccttctggttttgctcattcccgt |
115 |
Q |
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| T |
9828179 |
gataattgctcttctcccatctggttttgctcattcccgt |
9828218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 23252960 - 23252920
Alignment:
| Q |
75 |
tgataattgttcttctcccttctggttttgctcattcccgt |
115 |
Q |
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| T |
23252960 |
tgataattgcttttctcccatctggttttgctcattcccgt |
23252920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 28992536 - 28992496
Alignment:
| Q |
75 |
tgataattgttcttctcccttctggttttgctcattcccgt |
115 |
Q |
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| T |
28992536 |
tgataatttctcttctcccatctggttttgctcattcccgt |
28992496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 959124 - 959080
Alignment:
| Q |
203 |
tttaacgaaaatgagtaaaaatagatgggagaagagaagttatct |
247 |
Q |
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| T |
959124 |
tttaacggaaatgagcaaaaatagatgggagaagagcaattatct |
959080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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