View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2533_low_7 (Length: 292)

Name: NF2533_low_7
Description: NF2533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2533_low_7
NF2533_low_7
[»] chr4 (17 HSPs)
chr4 (17-287)||(2714136-2714405)
chr4 (80-207)||(9268308-9268435)
chr4 (80-207)||(2681101-2681228)
chr4 (83-202)||(52327007-52327127)
chr4 (80-201)||(779871-779992)
chr4 (83-200)||(38567968-38568085)
chr4 (83-203)||(7907405-7907523)
chr4 (80-201)||(23559991-23560112)
chr4 (109-188)||(30875381-30875460)
chr4 (83-201)||(5415156-5415274)
chr4 (109-201)||(55875842-55875934)
chr4 (127-200)||(206266-206341)
chr4 (83-203)||(41377380-41377500)
chr4 (109-200)||(46382018-46382109)
chr4 (127-164)||(27757768-27757805)
chr4 (136-201)||(30052370-30052435)
chr4 (134-198)||(35359645-35359709)
[»] chr8 (9 HSPs)
chr8 (80-207)||(17312846-17312973)
chr8 (81-207)||(9682354-9682480)
chr8 (84-207)||(27594261-27594384)
chr8 (109-203)||(1156271-1156365)
chr8 (80-201)||(40278965-40279086)
chr8 (83-201)||(37479192-37479310)
chr8 (83-199)||(18227002-18227118)
chr8 (134-202)||(45251488-45251556)
chr8 (134-198)||(40713779-40713843)
[»] chr1 (15 HSPs)
chr1 (80-207)||(46823626-46823753)
chr1 (80-201)||(7900132-7900253)
chr1 (83-203)||(1035724-1035844)
chr1 (109-203)||(37457629-37457723)
chr1 (80-201)||(23571007-23571128)
chr1 (109-201)||(50428478-50428570)
chr1 (83-199)||(43496377-43496493)
chr1 (83-201)||(19993376-19993494)
chr1 (109-203)||(51613260-51613354)
chr1 (130-207)||(26707118-26707195)
chr1 (80-138)||(26723252-26723311)
chr1 (84-190)||(10574374-10574480)
chr1 (134-200)||(19322821-19322887)
chr1 (109-203)||(47394377-47394471)
chr1 (132-201)||(19466327-19466396)
[»] chr7 (13 HSPs)
chr7 (111-205)||(8404754-8404848)
chr7 (80-202)||(48252886-48253009)
chr7 (109-203)||(43692549-43692643)
chr7 (83-190)||(36725802-36725909)
chr7 (107-196)||(49080769-49080857)
chr7 (109-201)||(49081237-49081329)
chr7 (135-201)||(23869939-23870005)
chr7 (109-201)||(43598826-43598918)
chr7 (107-190)||(46700864-46700947)
chr7 (83-201)||(44396388-44396506)
chr7 (136-190)||(38346439-38346493)
chr7 (83-172)||(32485437-32485526)
chr7 (127-203)||(12879278-12879354)
[»] chr6 (6 HSPs)
chr6 (82-207)||(19763518-19763644)
chr6 (80-207)||(19789206-19789334)
chr6 (109-187)||(13685400-13685478)
chr6 (109-178)||(30775356-30775425)
chr6 (109-190)||(2844147-2844228)
chr6 (102-191)||(10682518-10682607)
[»] chr5 (8 HSPs)
chr5 (80-201)||(39060173-39060294)
chr5 (80-207)||(9959311-9959438)
chr5 (135-203)||(4925098-4925166)
chr5 (102-201)||(23089325-23089424)
chr5 (109-199)||(14913466-14913556)
chr5 (109-199)||(34769571-34769661)
chr5 (80-165)||(14947660-14947745)
chr5 (135-190)||(16280927-16280982)
[»] chr3 (17 HSPs)
chr3 (104-201)||(1995577-1995674)
chr3 (80-201)||(15877734-15877855)
chr3 (98-207)||(40793167-40793276)
chr3 (111-207)||(35846164-35846259)
chr3 (83-201)||(36177214-36177332)
chr3 (109-199)||(35424138-35424228)
chr3 (80-201)||(52313860-52313981)
chr3 (80-201)||(53464270-53464391)
chr3 (84-203)||(35496088-35496207)
chr3 (83-201)||(4489847-4489965)
chr3 (109-201)||(49786948-49787040)
chr3 (127-182)||(20809642-20809697)
chr3 (112-201)||(49644364-49644453)
chr3 (158-201)||(45240856-45240899)
chr3 (109-176)||(45266899-45266966)
chr3 (128-200)||(14898461-14898533)
chr3 (137-201)||(29096142-29096206)
[»] chr2 (13 HSPs)
chr2 (80-171)||(7395455-7395546)
chr2 (80-203)||(9104547-9104670)
chr2 (109-202)||(32914457-32914551)
chr2 (83-200)||(6858971-6859088)
chr2 (109-201)||(18565740-18565832)
chr2 (134-198)||(39375711-39375775)
chr2 (85-168)||(3739897-3739980)
chr2 (109-190)||(14657523-14657603)
chr2 (81-201)||(8443224-8443344)
chr2 (133-184)||(8320451-8320502)
chr2 (134-201)||(8322172-8322239)
chr2 (83-202)||(38609917-38610036)
chr2 (109-201)||(40095791-40095883)
[»] scaffold0015 (1 HSPs)
scaffold0015 (83-201)||(56588-56706)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 2714136 - 2714405
Alignment:
Q  17 attattcgatattttgatcggtggaattggtcctccaaatttttcgattctttagtcggataccacccacatccatgccacttacatggattgtataaat 116  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  2714136 attattcggtattttggtcggtggaattggtcctccaaatttttcgattctttagtcggatgccacccacatccatgccacttacatgggttgtataaat 2714235  T
Q  117 gggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactcttacaatgggtccta 216  Q
    || || |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| | |||||    
T  2714236 ggatctcacgtaatactttatattatttcatactttccaattatttaaatcatttaactatattttttaaatatcgataccactcttacaat-gatccta 2714334  T
Q  217 aattccatatttataaaaaatggttgtgattatacaatgtcgtatgattatacattttatatattcttgga 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2714335 aattccatatttataaaaaatggttgtgattatacaatgtcgtatgattatacattttatatatttttgga 2714405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 80 - 207
Target Start/End: Original strand, 9268308 - 9268435
Alignment:
Q  80 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 178  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| |||| ||||| |    
T  9268308 cacccacatccatgccactctacatgggtggtataaatgggtccca-gtaatactttatattacttcacacttttcaattatttaaaccactcaactaca 9268406  T
Q  179 ttttttaaatatcaataccactcttacaa 207  Q
    |||| |||| ||| |||||| ||||||||    
T  9268407 ttttctaaacatccataccattcttacaa 9268435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 80 - 207
Target Start/End: Complemental strand, 2681228 - 2681101
Alignment:
Q  80 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 178  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| |||| ||||| |    
T  2681228 cacccacatccatgccactctacatgggtggtataaatgggtccca-gtaatactttatattacttcacacttttcaattatttaaaccactcaactaca 2681130  T
Q  179 ttttttaaatatcaataccactcttacaa 207  Q
    | || |||| ||| |||||| ||||||||    
T  2681129 tcttctaaacatccataccattcttacaa 2681101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 83 - 202
Target Start/End: Complemental strand, 52327127 - 52327007
Alignment:
Q  83 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 182  Q
    |||||||||||||||  | |||  | ||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||| ||||| |||||    
T  52327127 ccacatccatgccacccatatgagtagtataaatgggtcccacataatattttatattacttcacacttttcaattatttaaatcactcaactacatttt 52327028  T
Q  183 t-taaatatcaataccactct 202  Q
    | |||||||| ||||||||||    
T  52327027 tctaaatatccataccactct 52327007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 779871 - 779992
Alignment:
Q  80 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 179  Q
    ||||||||||||| ||||  | |||| | ||||||||||||| ||| |||||| |||||||| |||| | ||||| |||||||||| |||| ||||||||    
T  779871 cacccacatccataccacccatatgggtggtataaatgggtctcacataatacattatattacttcacatttttccattatttaaaccactcaactatat 779970  T
Q  180 tttttaaatatcaataccactc 201  Q
    ||| |||||||| |||||||||    
T  779971 tttctaaatatccataccactc 779992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 38568085 - 38567968
Alignment:
Q  83 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 182  Q
    ||||||||||||||||||||| | | |||| |||||  | |||  ||||  |||||||| ||| ||||||||||||||||||| |||| ||||| |||||    
T  38568085 ccacatccatgccacttacattggtggtatgaatggacctcactcaatatattatattacttcttacttttcaattatttaaaccactcaactacatttt 38567986  T
Q  183 ttaaatatcaataccact 200  Q
    ||||||||  ||||||||    
T  38567985 ttaaatattcataccact 38567968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 7907523 - 7907405
Alignment:
Q  83 ccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattt 181  Q
    |||||||||||||||| |  |||| | ||||||||||||||||| |||||||||||| |   ||| ||||| |||||||||||| |||| ||||| ||||    
T  7907523 ccacatccatgccactctttatgggtggtataaatgggtcccacataatactttatact---tcacactttccaattatttaaaccactcaactacattt 7907427  T
Q  182 tttaaatatcaataccactctt 203  Q
    | |||||||| ||| |||||||    
T  7907426 tctaaatatccatatcactctt 7907405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 23559991 - 23560112
Alignment:
Q  80 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 179  Q
    ||||||||||||||||||  | |||| | ||||||||||| ||||| |||||  ||| |||| || | ||||| |||||||||||| |||| ||||| ||    
T  23559991 cacccacatccatgccacccaaatgggtggtataaatgggacccacataatatattacattactttacactttccaattatttaaaccactcaactacat 23560090  T
Q  180 tttttaaatatcaataccactc 201  Q
    ||| |||||||| || ||||||    
T  23560091 tttctaaatatccatgccactc 23560112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 30875460 - 30875381
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaat 188  Q
    ||||||||| |||||||  ||||| ||||||||||| | ||||  ||||||||||||||||| ||||||||||| |||||    
T  30875460 gtataaatgagtcccactgaatacattatattattttaaacttcccaattatttaaatcactaaactatattttctaaat 30875381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 5415156 - 5415274
Alignment:
Q  83 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 182  Q
    |||||||||||||||  | |||||| |||||||||||  |||| |||||  |||||||| || | ||||  ||||||||||| ||||| ||||| |||||    
T  5415156 ccacatccatgccacccaaatggatggtataaatgggatccacataatatattatattactttacacttcccaattatttaactcactcaactacatttt 5415255  T
Q  183 ttaaatatcaataccactc 201  Q
     |||||||  |||||||||    
T  5415256 ctaaatattcataccactc 5415274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 201
Target Start/End: Complemental strand, 55875934 - 55875842
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 201  Q
    ||||||||||||||||| |||||  |||||||| |||| |  | ||||||| ||||| |||| ||||| |||||||||||||  |||||||||    
T  55875934 gtataaatgggtcccacataataaattatattacttcacatctctcaattacttaaaccactcaactacattttttaaatattcataccactc 55875842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 206341 - 206266
Alignment:
Q  127 taatactttatattatttcatacttttcaattatttaaatcacttaactatatt--ttttaaatatcaataccact 200  Q
    ||||| |||||||||||||||| ||||||||||||||||  | | |||||||||  ||||||||||| ||| ||||    
T  206341 taatattttatattatttcatatttttcaattatttaaacaattcaactatatttcttttaaatatctataacact 206266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 41377500 - 41377380
Alignment:
Q  83 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 182  Q
    |||| |||||| ||| || |||||| |||||||||||||  || |||||  |||||||| |||  |||| |||||||||| ||  ||| ||||| |||||    
T  41377500 ccacttccatgtcacctatatggatagtataaatgggtcttacataatatattatattacttcccacttctcaattattttaactactcaactacatttt 41377401  T
Q  183 ttaaatatcaataccactctt 203  Q
    ||||||||  |||| ||||||    
T  41377400 ttaaatattcatactactctt 41377380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 200
Target Start/End: Complemental strand, 46382109 - 46382018
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccact 200  Q
    ||||||||||  || || |||||  |||||||| |||| |||| ||||||||||||| ||||  ||||||||||| ||||||  ||||||||    
T  46382109 gtataaatggaccctacttaatatattatattagttcacacttctcaattatttaaaccactccactatatttttcaaatattcataccact 46382018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 27757768 - 27757805
Alignment:
Q  127 taatactttatattatttcatacttttcaattatttaa 164  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  27757768 taatattttatattattttatacttttcaattatttaa 27757805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 30052435 - 30052370
Alignment:
Q  136 atattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 201  Q
    |||||| |||||| |||| ||||||||||| || | ||||| |||||||||||||| |||| ||||    
T  30052435 atattacttcatattttttaattatttaaaccaatcaactacattttttaaatatccatactactc 30052370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 35359645 - 35359709
Alignment:
Q  134 ttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaatacca 198  Q
    |||||||||||||||| || ||| |||||||   ||||||||| ||||| |||||||| ||||||    
T  35359645 ttatattatttcatacattccaactatttaagcaacttaactaaattttctaaatatccatacca 35359709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 80 - 207
Target Start/End: Complemental strand, 17312973 - 17312846
Alignment:
Q  80 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 178  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| || |||||||||||||||| |||| |||||||||||||||||| |||| ||||| |    
T  17312973 cacccacatccatgccactctacatggatggtataaatgggtctca-gtaatactttatattacttcacacttttcaattatttaaaccactcaactaca 17312875  T
Q  179 ttttttaaatatcaataccactcttacaa 207  Q
    | || |||||||| |||||| ||||||||    
T  17312874 tcttctaaatatccataccattcttacaa 17312846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 81 - 207
Target Start/End: Complemental strand, 9682480 - 9682354
Alignment:
Q  81 acccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 179  Q
    |||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| |||| ||||| ||    
T  9682480 acccacatccatgccactctacatgggtggtataaatgggtccca-gtaatactttatattacttcacacttttcaattatttaaaccactcaactacat 9682382  T
Q  180 tttttaaatatcaataccactcttacaa 207  Q
    ||| |||| ||| |||||| ||||||||    
T  9682381 tttctaaacatccataccattcttacaa 9682354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 84 - 207
Target Start/End: Complemental strand, 27594384 - 27594261
Alignment:
Q  84 cacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 182  Q
    ||||||||||||||| ||||||| | | |||||||||||||||||||| ||||||||||||||| || || |||||||||||| |||| ||||| |||||    
T  27594384 cacatccatgccactctacatgg-tggaataaatgggtcccacgtaattctttatattatttcacaccttccaattatttaaaccactcaactacatttt 27594286  T
Q  183 ttaaatatcaataccactcttacaa 207  Q
     |||||||  |||||||||||||||    
T  27594285 ctaaatattcataccactcttacaa 27594261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 1156365 - 1156271
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 203  Q
    ||||||||||||| ||||||||||  |||||||||||| ||||  |||||||||||| |||| |||||||| || |||||||| |||||||||||    
T  1156365 gtataaatgggtctcacgtaatacaatatattatttcacacttcccaattatttaaaccactaaactatatcttctaaatatccataccactctt 1156271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 40279086 - 40278965
Alignment:
Q  80 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 179  Q
    ||||||||| ||||||||  | |||  | ||||||||||| ||||| |||||  |||||||| || ||||||| |||||||||||| |||| ||||| ||    
T  40279086 cacccacattcatgccacccaaatgagtggtataaatgggacccacataatatattatattactttatactttccaattatttaaaccactcaactacat 40278987  T
Q  180 tttttaaatatcaataccactc 201  Q
    ||| |||||||| |||||||||    
T  40278986 tttctaaatatccataccactc 40278965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 37479310 - 37479192
Alignment:
Q  83 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata-ttt 181  Q
    |||||||||||||||||| |||||| |||||||||  ||| || |||||  |||||||| || | |||||||||||||||||| |||| ||||| | |||    
T  37479310 ccacatccatgccacttatatggatggtataaatgaatcc-acataatatattatattactttaaacttttcaattatttaaaccactcaactacatttt 37479212  T
Q  182 tttaaatatcaataccactc 201  Q
    |||||||||| |||| ||||    
T  37479211 tttaaatatccatactactc 37479192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 18227118 - 18227002
Alignment:
Q  83 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 182  Q
    |||||||||||||||  |  ||| | ||||||| ||||||||| |||||| ||||||||  ||| ||||  |||||||||||| ||   ||||| |||||    
T  18227118 ccacatccatgccacccatttgggtggtataaacgggtcccacataatacattatattacctcacacttcccaattatttaaaccatccaactacatttt 18227019  T
Q  183 ttaaatatcaataccac 199  Q
    ||||||||| |||||||    
T  18227018 ttaaatatccataccac 18227002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 45251488 - 45251556
Alignment:
Q  134 ttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactct 202  Q
    |||| |||||||| | ||||| |||||||||| ||||||| || |||||||||||||| |||| |||||    
T  45251488 ttatgttatttcacatttttctattatttaaaccacttaaatacattttttaaatatccatactactct 45251556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 40713779 - 40713843
Alignment:
Q  134 ttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaatacca 198  Q
    ||||||||||||| |||||| |||||||||||  | | ||| | |||||||||||||| ||||||    
T  40713779 ttatattatttcacacttttaaattatttaaacaagtaaaccacattttttaaatatctatacca 40713843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 80 - 207
Target Start/End: Complemental strand, 46823753 - 46823626
Alignment:
Q  80 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 178  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| |||| ||||| |    
T  46823753 cacccacatccatgccactctacatgggtggtataaatgggtccca-gtaatactttatattacttcacacttttcaattatttaaaccactcaactaca 46823655  T
Q  179 ttttttaaatatcaataccactcttacaa 207  Q
    |||| |||| ||| |||||| ||||||||    
T  46823654 ttttctaaacatccataccattcttacaa 46823626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 7900132 - 7900253
Alignment:
Q  80 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 179  Q
    |||||||||||||||||| || |||||| ||||||||||| ||||| |||||  |||||||| || ||||||  |||||||||||| |||| ||||| ||    
T  7900132 cacccacatccatgccacctaaatggatcgtataaatgggacccacataatatattatattactttatacttcccaattatttaaaccactcaactacat 7900231  T
Q  180 tttttaaatatcaataccactc 201  Q
    ||| |||||||| |||||||||    
T  7900232 tttctaaatatccataccactc 7900253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 83 - 203
Target Start/End: Original strand, 1035724 - 1035844
Alignment:
Q  83 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 182  Q
    |||||||||| ||||| | |||| | ||||| |||||||||| |||||||  |||||||||||| |||| ||||||||||||| |||| |||||||||||    
T  1035724 ccacatccataccactcatatgggtggtatatatgggtcccatgtaatacaatatattatttcacacttctcaattatttaaaccactaaactatatttt 1035823  T
Q  183 ttaaatatcaataccactctt 203  Q
     |||||||  |||||||||||    
T  1035824 ctaaatatacataccactctt 1035844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 37457629 - 37457723
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 203  Q
    ||||||||||||||||||||||||  |||||||||||| |||| ||||||||| ||| |||| ||||||||||| |||||||  |||||||||||    
T  37457629 gtataaatgggtcccacgtaatacaatatattatttcacacttctcaattattaaaaccactcaactatattttctaaatatacataccactctt 37457723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 23571128 - 23571007
Alignment:
Q  80 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 179  Q
    ||||| ||||||| ||||  | |||| | ||||||||||||||||| |||||| |||||||| |||| | ||||| ||||||||||  ||| ||||||||    
T  23571128 cacccgcatccataccacccatatgggtggtataaatgggtcccacataatacattatattacttcacatttttccattatttaaacaactcaactatat 23571029  T
Q  180 tttttaaatatcaataccactc 201  Q
    |||||||||||| |||||||||    
T  23571028 tttttaaatatccataccactc 23571007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 109 - 201
Target Start/End: Complemental strand, 50428570 - 50428478
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 201  Q
    |||||||||| || |||| ||||  |||||||| |||| |||| |||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  50428570 gtataaatggatctcacgcaataaattatattacttcacacttctcaattatttaaatcactcaactatattttctaaatatccataccactc 50428478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 199
Target Start/End: Original strand, 43496377 - 43496493
Alignment:
Q  83 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 182  Q
    |||||||||||||||  |  ||||| ||||||| ||||||||| |||||| ||||||||  ||| |||| |||||||||||||  | | ||||| |||||    
T  43496377 ccacatccatgccacccatttggatggtataaacgggtcccacataatacattatattacctcacacttctcaattatttaaactattcaactacatttt 43496476  T
Q  183 ttaaatatcaataccac 199  Q
    ||||||||| |||||||    
T  43496477 ttaaatatccataccac 43496493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 19993494 - 19993376
Alignment:
Q  83 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 182  Q
    |||||||||||| ||| | |||| | ||||| |||||  |||| |||||  |||||||| || | |||||| ||||||||||| |||| |||||||||||    
T  19993494 ccacatccatgcaactcaaatgggtggtatagatgggatccacataatatattatattactttacactttttaattatttaaaccactcaactatatttt 19993395  T
Q  183 ttaaatatcaataccactc 201  Q
     |||||||| |||||||||    
T  19993394 ctaaatatccataccactc 19993376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 51613260 - 51613354
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 203  Q
    |||||||||| |||||| ||||| ||||||||| |||| ||||| |||||||||||| |||| ||||| ||||| ||||||   |||||||||||    
T  51613260 gtataaatggatcccacataataatttatattacttcacactttccaattatttaaaccactcaactacattttctaaatactcataccactctt 51613354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 26707195 - 26707118
Alignment:
Q  130 tactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactcttacaa 207  Q
    |||||||||||| |||| |||||||||||||||||| || | ||||| ||||| |||||||  |||||||||||||||    
T  26707195 tactttatattagttcacacttttcaattatttaaaccattcaactacattttctaaatattcataccactcttacaa 26707118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 26723311 - 26723252
Alignment:
Q  80 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttata 138  Q
    ||||||||||||||||||| ||||||| | |||||||| || ||||||||||||||||||    
T  26723311 cacccacatccatgccactctacatgggtggtataaataggccccacgtaatactttata 26723252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 190
Target Start/End: Complemental strand, 10574480 - 10574374
Alignment:
Q  84 cacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttt 183  Q
    ||||||||||||||| | ||   | ||||||||| || |||| |||||   ||||||| |||| | || |||||||||||||||||| || |||||||||    
T  10574480 cacatccatgccactaatataagtggtataaatgagttccacataatataatatattacttcacatttctcaattatttaaatcactcaattatattttt 10574381  T
Q  184 taaatat 190  Q
    |||||||    
T  10574380 taaatat 10574374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 19322887 - 19322821
Alignment:
Q  134 ttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccact 200  Q
    |||||||| | ||||||| ||||||||||||| || | ||||| |||||||||||||| ||||||||    
T  19322887 ttatattactacatacttctcaattatttaaaccattcaactacattttttaaatatccataccact 19322821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 47394377 - 47394471
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 203  Q
    |||||||||||| |||| |||||| |||||||| |||| ||||  ||||||||||||  |||   ||| |||||||||||||  |||||||||||    
T  47394377 gtataaatgggttccacataatacattatattacttcacacttcccaattatttaaactactcgtctacattttttaaatattcataccactctt 47394471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 19466327 - 19466396
Alignment:
Q  132 ctttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 201  Q
    ||||||| |||| || |||| |||||||||||||  |||  |||||||||||||||||||||||| ||||    
T  19466327 ctttataatattacacacttctcaattatttaaactactccactatattttttaaatatcaatactactc 19466396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 8404754 - 8404848
Alignment:
Q  111 ataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactcttac 205  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||| || || |||||||||||||| | |||||||||||    
T  8404754 ataaatgggtcccacgtaatactttatattatttcacactttccaattatttaaaccactcaattacattttttaaatatccacaccactcttac 8404848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 48253009 - 48252886
Alignment:
Q  80 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 179  Q
    ||||||||||||||||||  | |||  | ||||||||||||||||  ||||| ||||||||| |||| ||||| |||||||||||| |||| ||||| ||    
T  48253009 cacccacatccatgccacccatatgagtagtataaatgggtcccatataatattttatattacttcacactttccaattatttaaaccactcaactacat 48252910  T
Q  180 tttt-taaatatcaataccactct 202  Q
    |||| |||||||| ||||||||||    
T  48252909 ttttctaaatatccataccactct 48252886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 43692643 - 43692549
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 203  Q
    |||||||| |||||||| |||||| ||||||||||||| |||| ||||||||||||| |||| | ||| |||||||||||||  |||||||||||    
T  43692643 gtataaataggtcccacataatacattatattatttcacacttctcaattatttaaaccactcatctaaattttttaaatatttataccactctt 43692549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 36725909 - 36725802
Alignment:
Q  83 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 182  Q
    |||||||||| ||||| |||||| | |||||||||| |||||| |||| ||||||||||||| | |||| ||||||||||||| |||| ||||| | |||    
T  36725909 ccacatccataccactcacatgggtggtataaatggatcccacttaattctttatattattttacacttctcaattatttaaaccactcaactacaattt 36725810  T
Q  183 ttaaatat 190  Q
     |||||||    
T  36725809 ctaaatat 36725802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 196
Target Start/End: Original strand, 49080769 - 49080857
Alignment:
Q  107 ttgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaatac 196  Q
    |||||||||||||||  || |||||  |||||||| |||| |||||||||||||||||| ||||| |||| |||||||||||||||||||    
T  49080769 ttgtataaatgggtcttacataatatattatattacttcacacttttcaattatttaaaccactt-actacattttttaaatatcaatac 49080857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 201
Target Start/End: Complemental strand, 49081329 - 49081237
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 201  Q
    ||||||||||||| ||  |||||| ||||||||||| ||| ||||||||||||||||||| | | ||| ||||| |||||||  |||||||||    
T  49081329 gtataaatgggtctcatataatacattatattattttatatttttcaattatttaaatcattcatctacattttctaaatatttataccactc 49081237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 23870005 - 23869939
Alignment:
Q  135 tatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 201  Q
    ||||||| |||| ||||||||||| ||||||  ||||||||||||||| |||||||| |||||||||    
T  23870005 tatattacttcacacttttcaattttttaaactacttaactatattttctaaatatccataccactc 23869939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 201
Target Start/End: Complemental strand, 43598918 - 43598826
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 201  Q
    ||||||||||  || || |||||  |||||||| |||| |||| ||||||||||||| |||| |||||||||||| ||||||  |||||||||    
T  43598918 gtataaatggaccctacttaatatattatattagttcacacttctcaattatttaaaccactcaactatatttttcaaatattcataccactc 43598826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 190
Target Start/End: Complemental strand, 46700947 - 46700864
Alignment:
Q  107 ttgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatat 190  Q
    |||||||||||| || ||| |||| ||||||| ||||||| |||| ||||||||||||| ||||  | |||||||| |||||||    
T  46700947 ttgtataaatggctctcacttaattctttatactatttcacacttctcaattatttaaaccactatattatattttctaaatat 46700864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 44396506 - 44396388
Alignment:
Q  83 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 182  Q
    |||||||||||||||  | |||||| |||||||||||  |||| |||||  |||||||| || | ||||  |||||||||||  |||| ||||| |||||    
T  44396506 ccacatccatgccacccaaatggatggtataaatgggatccacataatatattatattactttacacttcccaattatttaacccactcaactacatttt 44396407  T
Q  183 ttaaatatcaataccactc 201  Q
     |||||||  |||||||||    
T  44396406 ctaaatattcataccactc 44396388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 38346439 - 38346493
Alignment:
Q  136 atattatttcatacttttcaattatttaaatcacttaactatattttttaaatat 190  Q
    |||||| |||||| |||| ||||||||||| |||| ||||| |||||||||||||    
T  38346439 atattacttcatattttttaattatttaaaccactcaactacattttttaaatat 38346493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 32485437 - 32485526
Alignment:
Q  83 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcactta 172  Q
    |||||||||| ||||| | || | | |||| |||||||||||| |||||| |||||||| ||||  ||| | ||||||||||| ||||||    
T  32485437 ccacatccataccactcatatcggtggtatcaatgggtcccacataatacattatattacttcacgcttcttaattatttaaaccactta 32485526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 12879278 - 12879354
Alignment:
Q  127 taatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 203  Q
    ||||| ||||||||| |||| |||| |||||||||||||  ||  ||||||||||| |||||||  |||||| ||||    
T  12879278 taatattttatattacttcacacttctcaattatttaaacaacacaactatattttctaaatattcataccattctt 12879354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 207
Target Start/End: Original strand, 19763518 - 19763644
Alignment:
Q  82 cccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatt 180  Q
    |||||||| |||||||| ||||||| | |||||| |||||||||||||||| ||||||||| |||| ||||| |||||||||||| ||||||| || |||    
T  19763518 cccacatctatgccactctacatgggtggtataactgggtcccacgtaatattttatattacttcacactttccaattatttaaaccacttaattacatt 19763617  T
Q  181 ttttaaatatcaataccactcttacaa 207  Q
    || |||||||  |||||||||||||||    
T  19763618 ttctaaatattcataccactcttacaa 19763644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 80 - 207
Target Start/End: Original strand, 19789206 - 19789334
Alignment:
Q  80 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 178  Q
    |||||||||| ||| |||| ||||||| | |||||| |||||||||||||||| |||||||||   || |||||||||||||||||||||||||| || |    
T  19789206 cacccacatctatgtcactctacatgggtggtataactgggtcccacgtaatattttatattacgccacacttttcaattatttaaatcacttaattaca 19789305  T
Q  179 ttttttaaatatcaataccactcttacaa 207  Q
    |||| |||||||  ||| |||||||||||    
T  19789306 ttttctaaatattcatatcactcttacaa 19789334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 13685400 - 13685478
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaa 187  Q
    ||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||| |||| ||||||||||| ||||    
T  13685400 gtataaatgggtcccacataatacattatattattttatacttttcaattatttaaaacactcaactatattttctaaa 13685478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 30775356 - 30775425
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 178  Q
    |||||||||||||| || |||||| |||||||| |||| |||||||||||||||||| |||| |||||||    
T  30775356 gtataaatgggtcctacataatacattatattacttcacacttttcaattatttaaaccactcaactata 30775425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 2844228 - 2844147
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatat 190  Q
    ||||||||| ||  ||| |||||| |||||||| |||| ||||  |||||||||||| |||| ||||| |||||||||||||    
T  2844228 gtataaatgagtttcacataatacattatattacttcacacttcccaattatttaaaccactcaactacattttttaaatat 2844147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 10682607 - 10682518
Alignment:
Q  102 atggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatc 191  Q
    |||||| || |||||||  ||||| |||||  |||||||| |||| |||| ||||||||||||| |||| ||||| |||||| |||||||    
T  10682607 atggatggtttaaatggaccccacttaatatattatattacttcacacttctcaattatttaaaccactcaactacatttttcaaatatc 10682518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 39060173 - 39060294
Alignment:
Q  80 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 179  Q
    ||||||||| |||  ||| || |||| | ||||||||||||||||| |||||| |||||||| |||| ||||||| |||||||||| |||| ||||||||    
T  39060173 cacccacatacatatcacctatatgggtggtataaatgggtcccacataatacattatattacttcacacttttcgattatttaaaccactcaactatat 39060272  T
Q  180 tttttaaatatcaataccactc 201  Q
    ||| |||||||| ||| |||||    
T  39060273 tttctaaatatccatatcactc 39060294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 207
Target Start/End: Complemental strand, 9959438 - 9959311
Alignment:
Q  80 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 178  Q
    |||||||||||||| |||| ||||||| | |||||||||||||| ||||||||||||||| || |||| ||||| ||||||||||||  ||| ||||| |    
T  9959438 cacccacatccatgtcactctacatgggtggtataaatgggtcc-acgtaatactttatactacttcacactttccaattatttaaactactcaactaca 9959340  T
Q  179 ttttttaaatatcaataccactcttacaa 207  Q
    |||| |||||||| ||||| || ||||||    
T  9959339 ttttctaaatatccataccgctattacaa 9959311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 4925098 - 4925166
Alignment:
Q  135 tatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 203  Q
    ||||||| |||| |||||||||||||||||| |||| ||||| |||||||||||||| ||| |||||||    
T  4925098 tatattacttcacacttttcaattatttaaaccactcaactacattttttaaatatccatatcactctt 4925166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 23089424 - 23089325
Alignment:
Q  102 atggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 201  Q
    |||||| |||||||||| |||||  |||||  ||||||||||||| | ||| ||||||||||||||||| | | | |||||||||||||  |||||||||    
T  23089424 atggatggtataaatggatcccatataatatattatattatttcacattttccaattatttaaatcactcatccacattttttaaatattcataccactc 23089325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 14913466 - 14913556
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccac 199  Q
    |||||||||||||  ||  ||||| ||||||||||| | ||||||||||||||||||  ||| ||||||||||| |||||||  |||||||    
T  14913466 gtataaatgggtcatactaaatacattatattattttacacttttcaattatttaaactactaaactatattttctaaatattcataccac 14913556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 199
Target Start/End: Complemental strand, 34769661 - 34769571
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccac 199  Q
    ||||||| ||||||||| |||||| ||||||||  ||| ||||  |||||||||||| || | ||||| |||||||||||||| |||||||    
T  34769661 gtataaacgggtcccacataatacattatattacctcacacttcccaattatttaaaccattcaactacattttttaaatatccataccac 34769571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 14947660 - 14947745
Alignment:
Q  80 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaa 165  Q
    |||||||||||||| ||   | || ||| |||||||||| |||||| ||||| ||||||||| || ||||||||||||||||||||    
T  14947660 cacccacatccatgtcatccatatagatggtataaatggatcccacataatattttatattactttatacttttcaattatttaaa 14947745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 16280927 - 16280982
Alignment:
Q  135 tatattatttcatacttttcaattatttaaatcacttaactatattttttaaatat 190  Q
    ||||||| |||| |||||||||||||| |||||||  ||||||||||| |||||||    
T  16280927 tatattacttcacacttttcaattattcaaatcacacaactatattttctaaatat 16280982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 1995577 - 1995674
Alignment:
Q  104 ggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 201  Q
    |||| ||||||||||||||||| |||||| |||||||| |||| ||||  |||||||||||| |||||||||| ||||| |||||||| |||||||||    
T  1995577 ggatggtataaatgggtcccacataatacattatattacttcacacttcccaattatttaaaccacttaactacattttctaaatatccataccactc 1995674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 15877734 - 15877855
Alignment:
Q  80 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 179  Q
    ||||| ||||||| ||||  | |||| | ||||||||||||||||| |||||| |||||||| |||| | ||||| |||||||||| |||| ||||||||    
T  15877734 cacccccatccataccacccatatgggtggtataaatgggtcccacataatacattatattacttcacatttttccattatttaaaccactcaactatat 15877833  T
Q  180 tttttaaatatcaataccactc 201  Q
    ||| |||||||| |||||||||    
T  15877834 tttctaaatatccataccactc 15877855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 98 - 207
Target Start/End: Original strand, 40793167 - 40793276
Alignment:
Q  98 ttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaatacc 197  Q
    |||||||| | |||||||||| | |||||||||||||||||||| |||  |||||||||||||||||| |||| ||||| ||||| |||||||  ||| |    
T  40793167 ttacatgggtggtataaatggattccacgtaatactttatattacttctcacttttcaattatttaaaccactcaactacattttataaatattcatatc 40793266  T
Q  198 actcttacaa 207  Q
    ||||||||||    
T  40793267 actcttacaa 40793276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 35846164 - 35846259
Alignment:
Q  111 ataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactcttacaa 207  Q
    ||||||||||| |||||||||||||||||||||| | |||||||||||||||||| || | ||||| ||||| ||||||||  ||||||||||||||    
T  35846164 ataaatgggtctcacgtaatactttatattattttacacttttcaattatttaaaccattcaactacattttctaaatatc-ctaccactcttacaa 35846259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 36177332 - 36177214
Alignment:
Q  83 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 182  Q
    |||||| |||||||| || |||||| ||||||||||||||||| |||||  |||||||| |||| ||||| ||||||||| || |||| | ||| |||||    
T  36177332 ccacattcatgccacctatatggatggtataaatgggtcccacataatagattatattacttcacactttccaattatttgaaccactcatctacatttt 36177233  T
Q  183 ttaaatatcaataccactc 201  Q
    ||||||||  |||||||||    
T  36177232 ttaaatattcataccactc 36177214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 35424138 - 35424228
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccac 199  Q
    ||||||||||||| ||| |||||| |||||||| |||| | |||||||||||||||| |||| ||||| ||||| |||||||| |||||||    
T  35424138 gtataaatgggtctcacataatacattatattacttcacatttttcaattatttaaaccactcaactacattttctaaatatccataccac 35424228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 52313860 - 52313981
Alignment:
Q  80 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 179  Q
    ||||||||||||||||||  | |||| | ||||||||||| ||||| || ||| |||||||| || | |||||  | ||||||||| |||| ||||| ||    
T  52313860 cacccacatccatgccacccaaatgggtggtataaatgggacccacatattacattatattactttacactttctagttatttaaaccactcaactacat 52313959  T
Q  180 tttttaaatatcaataccactc 201  Q
    ||| |||||||| |||||||||    
T  52313960 tttctaaatatccataccactc 52313981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 53464270 - 53464391
Alignment:
Q  80 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 179  Q
    ||||||||||||||||||  | |||| | ||||||||||| ||||| || ||| |||||||| || | |||||  | ||||||||| |||| ||||| ||    
T  53464270 cacccacatccatgccacccaaatgggtggtataaatgggacccacatattacattatattactttacactttctagttatttaaaccactcaactacat 53464369  T
Q  180 tttttaaatatcaataccactc 201  Q
    ||| |||||||| |||||||||    
T  53464370 tttctaaatatccataccactc 53464391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 203
Target Start/End: Original strand, 35496088 - 35496207
Alignment:
Q  84 cacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttt 183  Q
    ||||||| |||||| || |||  | |||||||||||||| || |||||  |||||||| |||| |||| |||||||||||||||| | ||||| ||||||    
T  35496088 cacatccttgccacctatatgagtggtataaatgggtcctacataatatattatattacttcacacttctcaattatttaaatcattcaactacattttt 35496187  T
Q  184 taaatatcaataccactctt 203  Q
    | ||| || |||| ||||||    
T  35496188 ttaatttccatactactctt 35496207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 4489965 - 4489847
Alignment:
Q  83 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 182  Q
    ||||||||||| |||||| |||||| ||||||||||| | ||  |||||  ||||||||||| |||  || |||||||||| | |||| || ||||||||    
T  4489965 ccacatccatgtcacttatatggatagtataaatgggacacatataatatattatattattttatatattccaattatttataccactcaattatatttt 4489866  T
Q  183 ttaaatatcaataccactc 201  Q
     |||||||  |||||||||    
T  4489865 ataaatatttataccactc 4489847  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 201
Target Start/End: Original strand, 49786948 - 49787040
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 201  Q
    ||||||||||| | ||  |||||  |||||||||||| ||| | ||||||||||||| |||| ||||||||||| |||||||  |||||||||    
T  49786948 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactatattttataaatattcataccactc 49787040  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 20809642 - 20809697
Alignment:
Q  127 taatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 182  Q
    ||||| ||||||||| ||||||||||| |||||||||||  |||||||||||||||    
T  20809642 taatattttatattacttcatactttttaattatttaaacaacttaactatatttt 20809697  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 49644453 - 49644364
Alignment:
Q  112 taaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 201  Q
    |||||||  ||||| |||||  |||||||| |||| |||| ||||||||||||| |||| ||||| |||||| ||||||| || ||||||    
T  49644453 taaatggaccccacttaatatattatattacttcacacttctcaattatttaaaccactcaactacatttttcaaatatccatgccactc 49644364  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 45240899 - 45240856
Alignment:
Q  158 tatttaaatcacttaactatattttttaaatatcaataccactc 201  Q
    |||||||| ||||||||||||||||| ||||||| |||||||||    
T  45240899 tatttaaaccacttaactatatttttcaaatatctataccactc 45240856  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 45266966 - 45266899
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaacta 176  Q
    ||||||||||||| |||  ||||| ||||||||||||| |||| ||||| ||||||| |||| |||||    
T  45266966 gtataaatgggtcacaccgaatacattatattatttcacacttctcaatcatttaaaccactaaacta 45266899  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 14898533 - 14898461
Alignment:
Q  128 aatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccact 200  Q
    ||||| ||||||||||| | | ||||||||| |||||| |||| ||||| ||||| |||||||  ||||||||    
T  14898533 aatacattatattattttacatttttcaattgtttaaaccactaaactacattttctaaatattcataccact 14898461  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 29096142 - 29096206
Alignment:
Q  137 tattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 201  Q
    ||||| |||| | |||||||||||||||| |||| ||||| ||| |||||||||  |||||||||    
T  29096142 tattacttcacatttttcaattatttaaaccactcaactacattatttaaatattcataccactc 29096206  T

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Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 7395546 - 7395455
Alignment:
Q  80 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcactt 171  Q
    |||||| |||||||||||| | |||| | ||||||||||||||||| ||||| ||||||||| |||| |||||||||||||||||| |||||    
T  7395546 cacccatatccatgccactcatatgggtagtataaatgggtcccacctaatattttatattacttcacacttttcaattatttaaaccactt 7395455  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 80 - 203
Target Start/End: Original strand, 9104547 - 9104670
Alignment:
Q  80 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 179  Q
    |||| ||||||||  |||| | |||| | ||||||||||||| ||  ||||| |||||||||||||| | || ||||||||||||| |||| ||||| ||    
T  9104547 cacctacatccatctcactcatatgggtggtataaatgggtctcatctaatattttatattatttcacaattctcaattatttaaaccactcaactacat 9104646  T
Q  180 tttttaaatatcaataccactctt 203  Q
    |||||||||||| |||||||||||    
T  9104647 tttttaaatatctataccactctt 9104670  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 202
Target Start/End: Complemental strand, 32914551 - 32914457
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttt-taaatatcaataccactct 202  Q
    ||||||||||||||||  ||||| ||||||||| |||| |||||||||||||||||| |||| ||||| |||||| |||||||| ||||||||||    
T  32914551 gtataaatgggtcccatataatattttatattacttcacacttttcaattatttaaaccactcaactacatttttctaaatatccataccactct 32914457  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 6858971 - 6859088
Alignment:
Q  83 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 182  Q
    |||||||||| ||||  | |||| | ||||||||||||||||||||||||  ||||||| |||| ||||  |||||||||||| |||| |||||||||||    
T  6858971 ccacatccataccacccatatgggtggtataaatgggtcccacgtaatacaatatattacttcacacttcccaattatttaaaccactaaactatatttt 6859070  T
Q  183 ttaaatatcaataccact 200  Q
     |||||||| || |||||    
T  6859071 ctaaatatccatgccact 6859088  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 201
Target Start/End: Complemental strand, 18565832 - 18565740
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 201  Q
    ||||||||||||| ||  |||||| |||||||| ||   |||| |||||||||||||| ||| ||||| |||||||||||||| |||||||||    
T  18565832 gtataaatgggtctcatataatacattatattactttcgacttctcaattatttaaatgactcaactacattttttaaatatccataccactc 18565740  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 39375775 - 39375711
Alignment:
Q  134 ttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaatacca 198  Q
    |||||||| |||||| ||| |||||||||||| |||| |||||||||||||||||||| ||||||    
T  39375775 ttatattacttcatattttccaattatttaaaccactcaactatattttttaaatatccatacca 39375711  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 3739980 - 3739897
Alignment:
Q  85 acatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatca 168  Q
    |||||||  ||| ||| |||||| |||||||| |||| ||| |||||| ||||||||||| ||| |||||||||||||||||||    
T  3739980 acatccacaccatttatatggatggtataaataggtctcacataatacattatattattttatatttttcaattatttaaatca 3739897  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 14657603 - 14657523
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatat 190  Q
    |||||||||| || ||| |||||| ||||||||||||| ||||| |||||||||||| |||| ||||| ||||| |||||||    
T  14657603 gtataaatgg-tcacacataatacattatattatttcacactttccaattatttaaaccactcaactacattttctaaatat 14657523  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 201
Target Start/End: Complemental strand, 8443344 - 8443224
Alignment:
Q  81 acccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatt 180  Q
    |||||||||||| ||||||| ||| || |||||||| |  ||||| ||||  |||||| ||||    |||||  |||||||||||  ||| || ||||||    
T  8443344 acccacatccataccacttatatgaatggtataaatagaccccacttaattttttataatattattcactttctaattatttaaactactcaattatatt 8443245  T
Q  181 ttttaaatatcaataccactc 201  Q
    |||||||||||||||| ||||    
T  8443244 ttttaaatatcaatactactc 8443224  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 8320502 - 8320451
Alignment:
Q  133 tttatattatttcatacttttcaattatttaaatcacttaactatatttttt 184  Q
    ||||||||| ||||| | |||||||||||||||| ||| |||||||||||||    
T  8320502 tttatattacttcattcatttcaattatttaaataactcaactatatttttt 8320451  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 8322239 - 8322172
Alignment:
Q  134 ttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 201  Q
    |||||||| |||| |||||||||||||||||| |||| || || |||||| ||||||  |||||||||    
T  8322239 ttatattacttcacacttttcaattatttaaaccactcaattacatttttcaaatattcataccactc 8322172  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 202
Target Start/End: Complemental strand, 38610036 - 38609917
Alignment:
Q  83 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 182  Q
    |||||||||| |||| || || ||| |||||||||| || |||  ||||  ||||||||||| | |||||   |||||||||| |||| || ||||||||    
T  38610036 ccacatccataccacctatattgatggtataaatggatctcactgaatatattatattattttacactttcttattatttaaaccactcaattatatttt 38609937  T
Q  183 ttaaatatcaataccactct 202  Q
     |||||||| |||| |||||    
T  38609936 ctaaatatccatactactct 38609917  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 201
Target Start/End: Complemental strand, 40095883 - 40095791
Alignment:
Q  109 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 201  Q
    ||||||||||  ||||  |||||  |||||||| || | |||| |||||||||||||  ||| ||||| |||||||||||||  |||||||||    
T  40095883 gtataaatggaccccatctaatatattatattactttacacttctcaattatttaaactactcaactacattttttaaatattcataccactc 40095791  T

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Target: scaffold0015 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 56706 - 56588
Alignment:
Q  83 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 182  Q
    ||||||||||||||   | |||||| ||||||||||| ||||| |||||  |||||||| || | |||| ||||||||||||| |||| ||||| |||||    
T  56706 ccacatccatgccatccaaatggatggtataaatgggacccacataatatattatattactttacacttctcaattatttaaaccactcaactacatttt 56607  T
Q  183 ttaaatatcaataccactc 201  Q
     |||||||| |||||||||    
T  56606 ctaaatatccataccactc 56588  T

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