View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2533_low_9 (Length: 268)
Name: NF2533_low_9
Description: NF2533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2533_low_9 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 505950 - 506208
Alignment:
| Q |
1 |
ataaccagttgaaaacccacatgagatgaaactagcataagctagattaatgtttggatcaactttaacaaggtaattgatatcaaccaccacatattcc |
100 |
Q |
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| T |
505950 |
ataaccagttgaaaacccacatgagatgaaactagcataagctagattaatgtttggatcaactctaagaaggtaattgatatcaaccaccacatattcc |
506049 |
T |
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| Q |
101 |
gaccatgaagcacaactcaaaacatggtataatgtttggcctcggacagacaaccttgaagtgttatctggcattagaccagtcaatctcacaggatgtg |
200 |
Q |
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| T |
506050 |
gaccatgaagcacaactcaaaacatggtataatgtttggcctcggacagacaaccttgaagtgttatctggcattagaccagtcaatctcacaggatgtg |
506149 |
T |
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| Q |
201 |
tcaaacacaaattggttttcccagaaacacaattctcacattcttcacactcgcctatg |
259 |
Q |
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| T |
506150 |
tcaaacacaaattggttttcccagaaacacaattctcacattcttcacactcgcctatg |
506208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 20051844 - 20052100
Alignment:
| Q |
1 |
ataaccagttgaaaacccacatgagatgaaactagcataagctagattaatgtttggatcaactttaacaaggtaattgatatcaaccaccacatattcc |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| | |||||| |||| |||||| || ||||| ||| |
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| T |
20051844 |
ataaccagttgaaaacccacatgagatgaaacttgcataagctagattaatggttggatcgactttgagaaggtagttgacatcaacaacgacatactcc |
20051943 |
T |
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| Q |
101 |
gaccatgaagcacaactcaaaacatggtataatgtttggcctcggacagacaaccttgaagtgttatctggcattagaccagtcaatctcacaggatgtg |
200 |
Q |
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| T |
20051944 |
gaccatgtagcacaactcaaaacatgatatagtctttggcctcgaacggacaatcttgaagtgttatcgggcattagaccggtgaatctcacagggtatg |
20052043 |
T |
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| Q |
201 |
tcaaacacaaattggttttcccagaaacacaattctcacattcttcacactcgccta |
257 |
Q |
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| T |
20052044 |
taagacaaagattggtttttcttgaaacacaattcacacattcttgacactccccta |
20052100 |
T |
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