View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2534_high_11 (Length: 367)

Name: NF2534_high_11
Description: NF2534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2534_high_11
NF2534_high_11
[»] chr5 (4 HSPs)
chr5 (1-154)||(74856-75009)
chr5 (252-353)||(74745-74846)
chr5 (1-57)||(37206112-37206168)
chr5 (18-59)||(26507196-26507237)
[»] chr4 (6 HSPs)
chr4 (1-57)||(41361232-41361288)
chr4 (3-59)||(54134570-54134626)
chr4 (3-57)||(19240744-19240798)
chr4 (3-57)||(44341168-44341222)
chr4 (3-60)||(951345-951402)
chr4 (3-60)||(20034376-20034433)
[»] chr6 (3 HSPs)
chr6 (1-60)||(20139185-20139244)
chr6 (1-60)||(22193625-22193684)
chr6 (3-59)||(11369658-11369714)
[»] chr7 (2 HSPs)
chr7 (1-57)||(35709867-35709923)
chr7 (3-57)||(7505211-7505265)
[»] scaffold1449 (1 HSPs)
scaffold1449 (3-57)||(1623-1677)
[»] chr2 (3 HSPs)
chr2 (62-156)||(17135378-17135472)
chr2 (3-57)||(17088297-17088352)
chr2 (3-59)||(21747389-21747445)
[»] chr1 (2 HSPs)
chr1 (3-57)||(30533367-30533421)
chr1 (3-57)||(43781247-43781301)
[»] chr3 (1 HSPs)
chr3 (1-57)||(20510555-20510611)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 8e-77; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 75009 - 74856
Alignment:
Q  1 cgttttattcgggctttcgggccgacccatatgggctagcccgttttgacagctctaatcttaacattgcttttaactttgcaaaggaaaagaccactcc 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75009 cgttttattcgggctttcggaccgacccatatgggctagcccgttttgacagctctaatcttaacattgcttttaactttgcaaaggaaaagaccactcc 74910  T
Q  101 aaatcttatggcggctcttacaagtatgtatgaaaagtagtcaacctcaaataa 154  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  74909 aagtcttatggcggctcttacaagtatgtatgaaaagtagtcaacctcaaataa 74856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 353
Target Start/End: Complemental strand, 74846 - 74745
Alignment:
Q  252 cggttggaatcgattttgacaacgattggagtgcaacgattatgagtagttcatcnnnnnnnnnnnnggttaaattttgatgatgttcatgatatggttc 351  Q
    |||||||||||||||||||||||||||||||||||||||||  || |||||||||            ||||||||||||||||||||| |||||||||||    
T  74846 cggttggaatcgattttgacaacgattggagtgcaacgattgggaatagttcatcaaaaaacaaaaaggttaaattttgatgatgttcgtgatatggttc 74747  T
Q  352 tt 353  Q
    ||    
T  74746 tt 74745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 37206112 - 37206168
Alignment:
Q  1 cgttttattcgggctttcgggccgacccatatgggctagcccgttttgacagctcta 57  Q
    |||||||||||||||||||||||| || ||| ||||  |||||||||||||||||||    
T  37206112 cgttttattcgggctttcgggccggcctatacgggccggcccgttttgacagctcta 37206168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 26507237 - 26507196
Alignment:
Q  18 cgggccgacccatatgggctagcccgttttgacagctctaat 59  Q
    ||||||| |||||||||||  |||||||||||||||||||||    
T  26507237 cgggccggcccatatgggcctgcccgttttgacagctctaat 26507196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 41361288 - 41361232
Alignment:
Q  1 cgttttattcgggctttcgggccgacccatatgggctagcccgttttgacagctcta 57  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  41361288 cgttttattcgggctttcgggccggcccatataggctagcccgttttgacagctcta 41361232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 54134570 - 54134626
Alignment:
Q  3 ttttattcgggctttcgggccgacccatatgggctagcccgttttgacagctctaat 59  Q
    |||||||||||||||||||||||||| || || |  |||| ||||||||||||||||    
T  54134570 ttttattcgggctttcgggccgacccttacggcccggcccattttgacagctctaat 54134626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 19240798 - 19240744
Alignment:
Q  3 ttttattcgggctttcgggccgacccatatgggctagcccgttttgacagctcta 57  Q
    ||||||||||||||||||||||  |||||||  |  |||||||||||||||||||    
T  19240798 ttttattcgggctttcgggccggtccatatgacccggcccgttttgacagctcta 19240744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 44341222 - 44341168
Alignment:
Q  3 ttttattcgggctttcgggccgacccatatgggctagcccgttttgacagctcta 57  Q
    |||||||||||||||||| ||| ||| ||||| |  |||||||||||||||||||    
T  44341222 ttttattcgggctttcggaccggcccgtatggcccggcccgttttgacagctcta 44341168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 951402 - 951345
Alignment:
Q  3 ttttattcgggctttcgggccgacccatatgggctagcccgttttgacagctctaatc 60  Q
    |||||||||||||||||||||| ||| || || |  |||| |||||||||||||||||    
T  951402 ttttattcgggctttcgggccggcccttacggcccggcccattttgacagctctaatc 951345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 20034376 - 20034433
Alignment:
Q  3 ttttattcgggctttcgggccgacccatatgggctagcccgttttgacagctctaatc 60  Q
    |||||||||||||||||||||| ||| || || |  |||| |||||||||||||||||    
T  20034376 ttttattcgggctttcgggccggcccttacggcccggcccattttgacagctctaatc 20034433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 20139244 - 20139185
Alignment:
Q  1 cgttttattcgggctttcgggccgacccatatgggctagcccgttttgacagctctaatc 60  Q
    |||||||||||||||||||||||| |||||| ||||  ||||||||||||||||||||||    
T  20139244 cgttttattcgggctttcgggccggcccatacgggcgggcccgttttgacagctctaatc 20139185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 22193625 - 22193684
Alignment:
Q  1 cgttttattcgggctttcgggccgacccatatgggctagcccgttttgacagctctaatc 60  Q
    |||||||||||||||||||||||| |||||| ||||  ||||||||||||||||||||||    
T  22193625 cgttttattcgggctttcgggccggcccatacgggcgggcccgttttgacagctctaatc 22193684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 11369658 - 11369714
Alignment:
Q  3 ttttattcgggctttcgggccgacccatatgggctagcccgttttgacagctctaat 59  Q
    |||||||||||||||||||| ||||| || || |  |||| ||||||||||||||||    
T  11369658 ttttattcgggctttcgggctgacccttacggcccggcccattttgacagctctaat 11369714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 35709923 - 35709867
Alignment:
Q  1 cgttttattcgggctttcgggccgacccatatgggctagcccgttttgacagctcta 57  Q
    |||||||||||||||||||||| | ||||||||| ||| ||||||||||||||||||    
T  35709923 cgttttattcgggctttcgggctggcccatatggcctaacccgttttgacagctcta 35709867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 7505265 - 7505211
Alignment:
Q  3 ttttattcgggctttcgggccgacccatatgggctagcccgttttgacagctcta 57  Q
    |||||||| ||||||||||||| |||||| ||||  |||||||||||||||||||    
T  7505265 ttttattcaggctttcgggccggcccatacgggccggcccgttttgacagctcta 7505211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1449 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1449
Description:

Target: scaffold1449; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 1623 - 1677
Alignment:
Q  3 ttttattcgggctttcgggccgacccatatgggctagcccgttttgacagctcta 57  Q
    |||||||||||||||||||||| |||||| ||||  |||||||||||||||||||    
T  1623 ttttattcgggctttcgggccggcccatacgggccggcccgttttgacagctcta 1677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 17135472 - 17135378
Alignment:
Q  62 taacattgcttttaactttgcaaaggaaaagaccactccaaatcttatggcggctcttacaagtatgtatgaaaagtagtcaacctcaaataaat 156  Q
    |||| ||||||||||| ||||||||||||| |||| |   | | | ||||||||| |||| | ||||||||||||||| ||||||||||||||||    
T  17135472 taacgttgcttttaacattgcaaaggaaaataccaatgagagtataatggcggcttttactattatgtatgaaaagtattcaacctcaaataaat 17135378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 17088297 - 17088352
Alignment:
Q  3 ttttattcgggctttcgggccgaccc-atatgggctagcccgttttgacagctcta 57  Q
    |||||||||||||||||||||| ||| ||| ||||  |||||||||||||||||||    
T  17088297 ttttattcgggctttcgggccggcccaatacgggccggcccgttttgacagctcta 17088352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 21747445 - 21747389
Alignment:
Q  3 ttttattcgggctttcgggccgacccatatgggctagcccgttttgacagctctaat 59  Q
    |||||||||||||||||||||| ||| || || |  |||| ||||||||||||||||    
T  21747445 ttttattcgggctttcgggccggcccttacggcccggcccattttgacagctctaat 21747389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 30533421 - 30533367
Alignment:
Q  3 ttttattcgggctttcgggccgacccatatgggctagcccgttttgacagctcta 57  Q
    |||||||||||||||||||||||||||| ||| |  | |||||||||||||||||    
T  30533421 ttttattcgggctttcgggccgacccatttggtccggtccgttttgacagctcta 30533367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 43781247 - 43781301
Alignment:
Q  3 ttttattcgggctttcgggccgacccatatgggctagcccgttttgacagctcta 57  Q
    |||||||||||||||||||||| ||| || || || |||| ||||||||||||||    
T  43781247 ttttattcgggctttcgggccggcccttacggcctggcccattttgacagctcta 43781301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 20510611 - 20510555
Alignment:
Q  1 cgttttattcgggctttcgggccgacccatatgggctagcccgttttgacagctcta 57  Q
    ||||||||| ||||||||| |||| ||||||||  |||||||||||||||| |||||    
T  20510611 cgttttatttgggctttcgagccggcccatatgaactagcccgttttgacaactcta 20510555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University