View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2534_high_12 (Length: 340)
Name: NF2534_high_12
Description: NF2534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2534_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 34 - 321
Target Start/End: Complemental strand, 21115764 - 21115477
Alignment:
| Q |
34 |
ctgcctttgcaaataatcatagcttaatttaaggcaacttaaagtagtccttactcctccttcatcattagatgcttttgaatccctcaacttatcaaac |
133 |
Q |
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| T |
21115764 |
ctgcctttgcaaataatcatagcttaatttaaggcaacttaaagtagtcctcactcctccttcatcattggatgcctttgaatccctcaacttatctaac |
21115665 |
T |
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| Q |
134 |
gcctgctgccacaactcaatttcatgccttccttttaaggacgaccctatagttttgattgataagggaagtccattacactcattgcagacttcccgtg |
233 |
Q |
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| T |
21115664 |
gcctgctgccacaactcaatttcatgccttccttttaaggacgaccctatagttttgattgataagggaagtccattacactcattgcagacttcccgtg |
21115565 |
T |
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| Q |
234 |
gcacaccatccaataacttggagtattcgtcatcaattcttgcaaacttttggaataatgtccaagattcatcttcagacaagagccc |
321 |
Q |
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| T |
21115564 |
gcacaccatccaataacttggagtattcgtcatcaattcttgcaaacttttggaataatgtccaagattcatcttcagacaagagccc |
21115477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 182 - 321
Target Start/End: Complemental strand, 21123043 - 21122904
Alignment:
| Q |
182 |
atagttttgattgataagggaagtccattacactcattgcagacttcccgtggcacaccatccaataacttggagtattcgtcatcaattcttgcaaact |
281 |
Q |
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||||||||||||| |||||||||||| || || |||| ||||| ||| |||| |||||||| ||| || ||| |||||||||||||| ||||| || |
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| T |
21123043 |
atagttttgattgctaagggaagtcccttgcattcatagcagatttcttgtggtacaccatctaatgacacagagaattcgtcatcaattactgcaagct |
21122944 |
T |
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| Q |
282 |
tttggaataatgtccaagattcatcttcagacaagagccc |
321 |
Q |
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| T |
21122943 |
tttggaagaatgtccaggattcatctttggacaagagccc |
21122904 |
T |
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