View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2534_high_17 (Length: 265)
Name: NF2534_high_17
Description: NF2534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2534_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 46620934 - 46620742
Alignment:
| Q |
1 |
gtgattgatgattgaaatatcattgtaaatttgtaaagtgagatttaagaggttgaatttactattttttgagtgattaatatagttttctctattgaac |
100 |
Q |
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| T |
46620934 |
gtgattgatgattgaaatatcattgtaaatttgtaaagtgagatttaagaggttgaatttactattttttgagtgattaatatagttttctctattgaac |
46620835 |
T |
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| Q |
101 |
tcatctaatcgtgttattaccttcattttaaatagtacac--gtctcattttggtgtgtttctcttaaacaaaatagtgaataatactggtag |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46620834 |
tcatctaatcgtgttattaccttcattttaaatagtacacatgtctcattttggtgtgtttctcttaaacaaaatagtgaataatactggtag |
46620742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 46621094 - 46621038
Alignment:
| Q |
201 |
agtaattacactgaatgattaaagttttttagtagttttaaaagagtgattgatgat |
257 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46621094 |
agtaattacaccgaatgattaaagttttttagtagttttaaaatagtgattgatgat |
46621038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 46620979 - 46620923
Alignment:
| Q |
201 |
agtaattacactgaatgattaaagttttttagtagttttaaaagagtgattgatgat |
257 |
Q |
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||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
46620979 |
agtaattacaccgaataattaaagttttttaatagttttaaaagagtgattgatgat |
46620923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 37148254 - 37148296
Alignment:
| Q |
22 |
attgtaaatttgtaaagtgagatttaagaggttgaatttacta |
64 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
37148254 |
attggaaatttgtaaagtgagatttaagatgttgaatttacta |
37148296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 37148186 - 37148243
Alignment:
| Q |
200 |
tagtaattacactgaatgattaaagttttttagtagttttaaaagagtgattgatgat |
257 |
Q |
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||||||||| ||||||||||| || | ||||||||||||||| |||| |||| ||||| |
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| T |
37148186 |
tagtaattatactgaatgattcaaatgttttagtagttttaacagagggattcatgat |
37148243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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