View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2534_high_21 (Length: 238)

Name: NF2534_high_21
Description: NF2534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2534_high_21
NF2534_high_21
[»] chr4 (10 HSPs)
chr4 (18-238)||(3767583-3767804)
chr4 (161-238)||(34513847-34513924)
chr4 (136-238)||(28116019-28116121)
chr4 (129-238)||(45499270-45499379)
chr4 (137-210)||(21342169-21342242)
chr4 (138-238)||(34940259-34940359)
chr4 (136-208)||(37911176-37911248)
chr4 (177-232)||(17702135-17702190)
chr4 (197-238)||(37910756-37910797)
chr4 (149-221)||(53923655-53923727)
[»] chr8 (11 HSPs)
chr8 (130-232)||(32962016-32962118)
chr8 (136-231)||(37246131-37246226)
chr8 (137-238)||(43596799-43596900)
chr8 (137-232)||(16295305-16295400)
chr8 (137-232)||(16303007-16303102)
chr8 (136-238)||(15268592-15268694)
chr8 (168-232)||(11657003-11657067)
chr8 (130-232)||(16456456-16456558)
chr8 (129-192)||(42180461-42180524)
chr8 (169-214)||(511650-511695)
chr8 (173-238)||(8491111-8491176)
[»] chr2 (7 HSPs)
chr2 (130-238)||(40619789-40619897)
chr2 (149-238)||(27338700-27338789)
chr2 (129-236)||(13996248-13996355)
chr2 (130-232)||(13349600-13349702)
chr2 (130-238)||(37485562-37485669)
chr2 (130-214)||(19695466-19695550)
chr2 (168-232)||(41595239-41595303)
[»] chr5 (11 HSPs)
chr5 (136-238)||(29860834-29860936)
chr5 (130-238)||(42684006-42684114)
chr5 (137-238)||(7883868-7883969)
chr5 (130-238)||(5868364-5868472)
chr5 (137-238)||(33008088-33008189)
chr5 (137-238)||(15922278-15922379)
chr5 (131-232)||(31077809-31077910)
chr5 (175-238)||(25347156-25347219)
chr5 (173-238)||(33134090-33134155)
chr5 (174-229)||(21092482-21092537)
chr5 (149-238)||(2498915-2499004)
[»] chr3 (9 HSPs)
chr3 (128-238)||(28457872-28457982)
chr3 (136-232)||(7818515-7818611)
chr3 (129-214)||(40701143-40701228)
chr3 (130-238)||(33072584-33072692)
chr3 (137-232)||(21495053-21495147)
chr3 (155-238)||(21748488-21748571)
chr3 (129-214)||(46663163-46663248)
chr3 (180-220)||(27488469-27488509)
chr3 (135-238)||(41865803-41865906)
[»] chr6 (7 HSPs)
chr6 (129-238)||(12255070-12255179)
chr6 (133-238)||(23404450-23404555)
chr6 (130-238)||(29979490-29979597)
chr6 (168-227)||(9314806-9314865)
chr6 (136-238)||(32329317-32329418)
chr6 (137-210)||(10789545-10789618)
chr6 (138-235)||(12267316-12267413)
[»] chr1 (7 HSPs)
chr1 (129-238)||(49549473-49549582)
chr1 (136-232)||(28623012-28623108)
chr1 (130-238)||(37347105-37347213)
chr1 (136-238)||(19909968-19910068)
chr1 (163-232)||(48527377-48527446)
chr1 (177-238)||(52267631-52267692)
chr1 (137-238)||(10306886-10306987)
[»] chr7 (8 HSPs)
chr7 (136-238)||(18503172-18503274)
chr7 (137-238)||(15673046-15673149)
chr7 (151-238)||(3480820-3480908)
chr7 (136-238)||(25102600-25102707)
chr7 (130-232)||(24429348-24429450)
chr7 (168-214)||(34703033-34703079)
chr7 (134-238)||(32585842-32585946)
chr7 (189-238)||(6110160-6110209)
[»] scaffold0817 (1 HSPs)
scaffold0817 (136-197)||(1-62)
[»] scaffold0702 (1 HSPs)
scaffold0702 (177-215)||(4089-4127)
[»] scaffold0662 (1 HSPs)
scaffold0662 (177-215)||(3975-4013)
[»] scaffold0957 (1 HSPs)
scaffold0957 (173-238)||(1659-1724)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 3767583 - 3767804
Alignment:
Q  18 gtagggtacgtatttttctaactatttcannnnnnnaacaagtaaaaatgagattatatataaacaccaacgaagaggccttaaaagcacccggtgtacc 117  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3767583 gtagggtacgtatttttctaactatttcatttttttaacaagtaaaaatgagattatatataaacaccaacgaagaggccttaaaagcacccggtgtacc 3767682  T
Q  118 a-caaagacctcaagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagt 216  Q
    | |||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3767683 aacaaagacctcaagggtccgtttgatggtcaggatagggagatatgatatgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagt 3767782  T
Q  217 gatagtataaaataaatcattt 238  Q
    ||||| ||||||||||||||||    
T  3767783 gataggataaaataaatcattt 3767804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 34513924 - 34513847
Alignment:
Q  161 atgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatcattt 238  Q
    |||||| ||||||||||| ||||||||||||||| |||||||||||||||||||  ||||| |||||||||| |||||    
T  34513924 atgatatgatacattaattatatcctgcttaaatctcatgtttgatgcaccaaatggataggataaaataaaccattt 34513847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 238
Target Start/End: Complemental strand, 28116121 - 28116019
Alignment:
Q  136 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatca 235  Q
    ||||| |||||  ||||||||||  |||||| ||||||||||||||||  ||||||||| |||| ||||||||||| ||||||||  |||||||||| ||    
T  28116121 cgtttaatggtgaggatagggagccatgatatgatacattaatcatattatgcttaaatctcatatttgatgcacctaagtgataagataaaataaacca 28116022  T
Q  236 ttt 238  Q
    |||    
T  28116021 ttt 28116019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 238
Target Start/End: Complemental strand, 45499379 - 45499270
Alignment:
Q  129 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaa 228  Q
    |||||| ||| ||||| || ||||||||||  | |||| |||| ||||||||||| || |||||||  |||||||||||||||||| |||||| ||||||    
T  45499379 aagggtccgtgtgatgatcaggatagggaggcaagatatgatatattaatcatattcttcttaaatcacatgtttgatgcaccaaaatgataggataaaa 45499280  T
Q  229 taaatcattt 238  Q
    |||| |||||    
T  45499279 taaaccattt 45499270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 21342242 - 21342169
Alignment:
Q  137 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcac 210  Q
    ||||||||| |  ||||| |||| | |||| ||||||||||||||||||||||||||| |||||||||||||||    
T  21342242 gtttgatggccaagatagagagacaggatatgatacattaatcatatcctgcttaaatctcatgtttgatgcac 21342169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 34940259 - 34940359
Alignment:
Q  138 tttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatcatt 237  Q
    |||||||||| ||||||||||| |  |||  ||||||||||||| | ||  |||||| |||||||||||||||||||  ||||| |||||||||| ||||    
T  34940259 tttgatggtcaggatagggagacagaatataatacattaatcatgttctctttaaatctcatgtttgatgcaccaaaaggataggataaaataaaccatt 34940358  T
Q  238 t 238  Q
    |    
T  34940359 t 34940359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 37911248 - 37911176
Alignment:
Q  136 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgc 208  Q
    |||||||||||| |||||||||||   |||| |||||||||| |||||||| || |||| |||||||||||||    
T  37911248 cgtttgatggtcaggatagggagacgggatatgatacattaaccatatcctactgaaatctcatgtttgatgc 37911176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 17702135 - 17702190
Alignment:
Q  177 atcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaa 232  Q
    |||||||| | ||||||| |||||||||||||||||||| ||||  ||||||||||    
T  17702135 atcatatctttcttaaatctcatgtttgatgcaccaaagagataagataaaataaa 17702190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 37910797 - 37910756
Alignment:
Q  197 catgtttgatgcaccaaagtgatagtataaaataaatcattt 238  Q
    ||||||||||||||||||| ||||  ||||||||||||||||    
T  37910797 catgtttgatgcaccaaagggatacgataaaataaatcattt 37910756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 53923655 - 53923727
Alignment:
Q  149 ggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatag 221  Q
    ||||| |||||||  ||| |||| ||||||||||| |  ||||| | |||||||||||||||||||| |||||    
T  53923655 ggataaggagataaaatatgatatattaatcatattcgacttaattatcatgtttgatgcaccaaagagatag 53923727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 32962016 - 32962118
Alignment:
Q  130 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaat 229  Q
    ||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| | ||||| |||||||    
T  32962016 agggtgcgtttgatggtcaggatagggagatatgatatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaatgggatagaataaaat 32962115  T
Q  230 aaa 232  Q
    |||    
T  32962116 aaa 32962118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 37246131 - 37246226
Alignment:
Q  136 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataa 231  Q
    |||||||||||   |||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||| |||  ||||| |||||||||    
T  37246131 cgtttgatggtaaagatagggagacatgatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaaaagataggataaaataa 37246226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 43596799 - 43596900
Alignment:
Q  137 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatcat 236  Q
    ||||||||| | ||||||||||  | |||| ||||||||||||||||||  ||||||| ||||||||||||||| |||| ||||| ||||||||||||||    
T  43596799 gtttgatggccaggatagggagtcaggatatgatacattaatcatatccgacttaaatatcatgtttgatgcacgaaagagataggataaaataaatcat 43596898  T
Q  237 tt 238  Q
    ||    
T  43596899 tt 43596900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 16295305 - 16295400
Alignment:
Q  137 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaa 232  Q
    |||||||||||  ||||| |||| || ||| ||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||| ||||||    
T  16295305 gtttgatggtcaagatagagagacataatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaagagatagcatacaataaa 16295400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 16303007 - 16303102
Alignment:
Q  137 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaa 232  Q
    |||||||||||  ||||| |||| || ||| ||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||| ||||||    
T  16303007 gtttgatggtcaagatagagagacataatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaagagatagcatacaataaa 16303102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 15268592 - 15268694
Alignment:
Q  136 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatca 235  Q
    |||||||||||| ||||| ||||| | |||| |||||||||||||||||||||| |||| ||||||||||| || ||||  ||||| |||||||||| ||    
T  15268592 cgtttgatggtcaggataaggagacaggatatgatacattaatcatatcctgctgaaatctcatgtttgatacaacaaatggataggataaaataaacca 15268691  T
Q  236 ttt 238  Q
    |||    
T  15268692 ttt 15268694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 11657067 - 11657003
Alignment:
Q  168 gatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaa 232  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||| ||||  ||||||||||    
T  11657067 gatacattaatcatatcctgcttaaatctcatgtttgatgtaccaaagggatatgataaaataaa 11657003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 16456456 - 16456558
Alignment:
Q  130 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaat 229  Q
    |||||||||||||||||| ||||| |||||    ||| |||| || |||||||| || ||||||| |||||||||||||||||||| ||||  |||||||    
T  16456456 agggttcgtttgatggtcaggataaggagacgaaatatgatatatcaatcatattctacttaaatatcatgtttgatgcaccaaagagataagataaaat 16456555  T
Q  230 aaa 232  Q
    |||    
T  16456556 aaa 16456558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 42180461 - 42180524
Alignment:
Q  129 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaa 192  Q
    |||||| |||||||||||| ||||||||||| |  ||| |||||||||||||||||| ||||||    
T  42180461 aagggtgcgtttgatggtcaggatagggagacagaatatgatacattaatcatatccagcttaa 42180524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 511650 - 511695
Alignment:
Q  169 atacattaatcatatcctgcttaaatttcatgtttgatgcaccaaa 214  Q
    ||||||| || ||||||||||| |||||||||||||||||||||||    
T  511650 atacatttattatatcctgcttgaatttcatgtttgatgcaccaaa 511695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 8491176 - 8491111
Alignment:
Q  173 attaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatcattt 238  Q
    |||||||||||| || |||||| |||| ||||||| | ||||| ||||  ||||||||||||||||    
T  8491176 attaatcatatcttgtttaaatatcatatttgatgtatcaaagagatatgataaaataaatcattt 8491111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 40619897 - 40619789
Alignment:
Q  130 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaat 229  Q
    ||||| |||||||||||| |||||| |||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||  |||||||    
T  40619897 agggtgcgtttgatggtcaggatagagagataggatatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaaagggatatgataaaat 40619798  T
Q  230 aaatcattt 238  Q
    ||| |||||    
T  40619797 aaaccattt 40619789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 27338700 - 27338789
Alignment:
Q  149 ggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatcattt 238  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||  |||||||||| |||||    
T  27338700 ggatagggagataggatatgatacattaatcatatcctacttaaatctcatgtttgatgcactaaaatgatatgataaaataaaccattt 27338789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 236
Target Start/End: Complemental strand, 13996355 - 13996248
Alignment:
Q  129 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaa 228  Q
    |||||| |||||||||||| ||||||| |||   |||| ||||||||||| ||||||| ||||||| |||||||||||||||||||| || |  ||||||    
T  13996355 aagggtgcgtttgatggtcaggataggaagacgggatatgatacattaattatatcctccttaaatctcatgtttgatgcaccaaagggacatgataaaa 13996256  T
Q  229 taaatcat 236  Q
    ||||||||    
T  13996255 taaatcat 13996248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 13349702 - 13349600
Alignment:
Q  130 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaat 229  Q
    ||||| |||||||| ||| ||||||| ||| | |||| ||||||||||| ||||||| ||||||| |||||||||||||||||||  ||||| |||||||    
T  13349702 agggtccgtttgatagtcaggataggaagacaggatatgatacattaattatatcctacttaaatctcatgtttgatgcaccaaatggataggataaaat 13349603  T
Q  230 aaa 232  Q
    |||    
T  13349602 aaa 13349600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 37485562 - 37485669
Alignment:
Q  130 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaat 229  Q
    |||||||||||||||||  |||||| |||| | ||||  ||| |||||||||||||||||||||| |||||||||||||||||||  ||||  |||||||    
T  37485562 agggttcgtttgatggta-ggatagagagacaagatataatatattaatcatatcctgcttaaatctcatgtttgatgcaccaaaaagatatgataaaat 37485660  T
Q  230 aaatcattt 238  Q
    ||| |||||    
T  37485661 aaaccattt 37485669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 19695466 - 19695550
Alignment:
Q  130 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaa 214  Q
    ||||| ||||||||| || |||||| |||| | |||| ||||||||||||||||||| | ||||| |||||||||||||||||||    
T  19695466 agggtgcgtttgatgatcaggatagagagacaggatatgatacattaatcatatcctacgtaaatctcatgtttgatgcaccaaa 19695550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 41595239 - 41595303
Alignment:
Q  168 gatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaa 232  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||| ||| | ||||||||||    
T  41595239 gatacattaatcatatcgtgcttaaatctcatgtttgatgcaccaaagagattggataaaataaa 41595303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 29860834 - 29860936
Alignment:
Q  136 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatca 235  Q
    |||||||||| | | ||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| ||    
T  29860834 cgtttgatggccagtatagggagacatgatatgatacattaatcatattctgcttaaatttcatgtttgatgcaccaaagagataggataaaataaacca 29860933  T
Q  236 ttt 238  Q
    |||    
T  29860934 ttt 29860936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 42684114 - 42684006
Alignment:
Q  130 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaat 229  Q
    |||||||||||||||||  ||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| | ||| ||||| ||||  |||||||    
T  42684114 agggttcgtttgatggttaggatagggagacatgatatgatacattaatcatatcctgcttaaatctcatgtttcaagcatcaaagggataagataaaat 42684015  T
Q  230 aaatcattt 238  Q
    |||||||||    
T  42684014 aaatcattt 42684006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 7883969 - 7883868
Alignment:
Q  137 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatcat 236  Q
    ||||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||| | |||||||||||| ||||| ||||| |||||||||| |||    
T  7883969 gtttgatggtcaggatagggagacaggatatgatacattaatcatatcctgcttaaatcttatgtttgatgcatcaaagggataggataaaataaaccat 7883870  T
Q  237 tt 238  Q
    ||    
T  7883869 tt 7883868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 5868472 - 5868364
Alignment:
Q  130 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaat 229  Q
    ||||| |||||||||||| ||||||||||| | |||| |||| |||||||| ||||| ||||||| |||||||||||||||||||| ||||| |||||||    
T  5868472 agggtccgtttgatggtcaggatagggagacaagatatgatatattaatcacatcctacttaaatctcatgtttgatgcaccaaagagataggataaaat 5868373  T
Q  230 aaatcattt 238  Q
    ||| |||||    
T  5868372 aaaccattt 5868364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 33008189 - 33008088
Alignment:
Q  137 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatcat 236  Q
    ||||||||||| ||||||||||| | |||| ||||||||||| ||||||||||||||| ||| |||||||  ||||||| ||||| ||||||||||||||    
T  33008189 gtttgatggtcaggatagggagacaggatatgatacattaattatatcctgcttaaatatcacgtttgatagaccaaagggataggataaaataaatcat 33008090  T
Q  237 tt 238  Q
    ||    
T  33008089 tt 33008088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 15922379 - 15922278
Alignment:
Q  137 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatcat 236  Q
    ||||||||||| |||||| || | | |||| ||||||||||||||||| ||||||||| |||||||||||||| ||||||||||  ||||||||||| ||    
T  15922379 gtttgatggtcaggatagagatacaggatatgatacattaatcatatcttgcttaaatctcatgtttgatgcatcaaagtgatatgataaaataaattat 15922280  T
Q  237 tt 238  Q
    ||    
T  15922279 tt 15922278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 232
Target Start/End: Original strand, 31077809 - 31077910
Alignment:
Q  131 gggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaata 230  Q
    |||| ||||| |||||| ||||||  ||||| |||| |||||||||||||||| || ||||||| | |||||||||||||||||| | ||| ||||||||    
T  31077809 gggtccgtttaatggtcaggatagacagataggatatgatacattaatcatattctacttaaatctaatgtttgatgcaccaaagggttaggataaaata 31077908  T
Q  231 aa 232  Q
    ||    
T  31077909 aa 31077910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 25347219 - 25347156
Alignment:
Q  175 taatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatcattt 238  Q
    |||||||||||| ||||||| |||||||||||||||||||| ||||| |||||||||| |||||    
T  25347219 taatcatatcctccttaaatctcatgtttgatgcaccaaagggataggataaaataaaccattt 25347156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 33134090 - 33134155
Alignment:
Q  173 attaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatcattt 238  Q
    |||||||||||||||||||||| | |||||| ||||||||||| ||||| |||||||||| |||||    
T  33134090 attaatcatatcctgcttaaatcttatgtttaatgcaccaaagggataggataaaataaaccattt 33134155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 21092537 - 21092482
Alignment:
Q  174 ttaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaat 229  Q
    |||||||||||||| ||||||||||||||||||||||||||  ||||| |||||||    
T  21092537 ttaatcatatcctgtttaaatttcatgtttgatgcaccaaatggataggataaaat 21092482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 2498915 - 2499004
Alignment:
Q  149 ggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatcattt 238  Q
    |||||| ||||  ||||| |||| ||||||||||| || ||||||| |||||||||||||||| ||| ||||   |||||||||||||||    
T  2498915 ggatagagagacgtgatatgatatattaatcatattctacttaaatatcatgtttgatgcacccaagagatatggtaaaataaatcattt 2499004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 128 - 238
Target Start/End: Complemental strand, 28457982 - 28457872
Alignment:
Q  128 caagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaa 227  Q
    ||||||| |||||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||| |  ||||||||||||||||||||||  |||||    
T  28457982 caagggtccgtttgatggtcaggatagggagacaggatatgatacattaatcatatcctgcttaaatcttgtgtttgatgcaccaaagtgatatgataaa 28457883  T
Q  228 ataaatcattt 238  Q
    ||||| |||||    
T  28457882 ataaaccattt 28457872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 136 - 232
Target Start/End: Complemental strand, 7818611 - 7818515
Alignment:
Q  136 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaa 232  Q
    ||||||||||||  |||||||| |||||||| |||||||||||||||| |||||||||| ||||||||||| ||| |||| ||||| ||||||||||    
T  7818611 cgtttgatggtcaagatagggatatatgatatgatacattaatcatattctgcttaaatctcatgtttgatacactaaagagatagaataaaataaa 7818515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 40701228 - 40701143
Alignment:
Q  129 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaa 214  Q
    |||||| |||||||||||| ||||||  ||| | |||| ||||||||||||||||||||||||||| ||||||||||||| |||||    
T  40701228 aagggtccgtttgatggtcaggatagaaagacaggatatgatacattaatcatatcctgcttaaatctcatgtttgatgctccaaa 40701143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 33072584 - 33072692
Alignment:
Q  130 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaat 229  Q
    ||||| |||||||| ||| ||||||||||| |  ||| |||||||||||||||||||  ||||||||||||||||||||||| |||  |||  |||||||    
T  33072584 agggtgcgtttgatagtcaggatagggagacaaaatatgatacattaatcatatcctatttaaatttcatgtttgatgcacctaaggaatatgataaaat 33072683  T
Q  230 aaatcattt 238  Q
    ||| |||||    
T  33072684 aaaccattt 33072692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 21495053 - 21495147
Alignment:
Q  137 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaa 232  Q
    |||||||| ||  |||||||||| |||||| |||| |||||||||||| || |||||| ||||||||||||||||||| |||||| ||||||||||    
T  21495053 gtttgatgatcacgatagggagacatgatatgatatattaatcatatcttg-ttaaatctcatgtttgatgcaccaaattgataggataaaataaa 21495147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 21748571 - 21748488
Alignment:
Q  155 ggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatcattt 238  Q
    ||||| |||||| |||||||||||||||| |||||||||| ||||||||||||||||||| |||||  ||||||| || |||||    
T  21748571 ggagacatgatatgatacattaatcatattctgcttaaatctcatgtttgatgcaccaaaatgatatgataaaattaaccattt 21748488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 46663163 - 46663248
Alignment:
Q  129 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaa 214  Q
    ||||| ||||| ||||||| ||||| ||||| |  ||| |||||||| |||||||| || |||||| |||| ||||||||||||||    
T  46663163 aaggggtcgttagatggtcgggataaggagacaatatatgatacatttatcatatcatgtttaaatctcatatttgatgcaccaaa 46663248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 27488469 - 27488509
Alignment:
Q  180 atatcctgcttaaatttcatgtttgatgcaccaaagtgata 220  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  27488469 atatcctggttaaatttcatgtttgatgcaccaaagagata 27488509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 41865906 - 41865803
Alignment:
Q  135 tcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatc 234  Q
    |||||||||||   ||||||||||||| |||| |||| | | ||||||||| |||||||| |||| |||||| ||  |||| ||||  ||| ||||||||    
T  41865906 tcgtttgatggcaaggatagggagataagatatgataaaattatcatatcccgcttaaatctcatatttgattcataaaagggatataatataataaatc 41865807  T
Q  235 attt 238  Q
    ||||    
T  41865806 attt 41865803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 12255070 - 12255179
Alignment:
Q  129 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaa 228  Q
    |||||| |||||||||||| ||||||||||| |  ||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||    
T  12255070 aagggtgcgtttgatggtcaggatagggagacagaatatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaaagggatgggataaaa 12255169  T
Q  229 taaatcattt 238  Q
    |||| |||||    
T  12255170 taaaccattt 12255179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 23404450 - 23404555
Alignment:
Q  133 gttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaa 232  Q
    ||||| ||||||| | ||||||||||| |||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  23404450 gttcgattgatggccaggatagggagacatgatatgatacattaataatatcctgcataaatttcatgtttgatgcaccaaagagataggataaaataaa 23404549  T
Q  233 tcattt 238  Q
     |||||    
T  23404550 ccattt 23404555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 29979597 - 29979490
Alignment:
Q  130 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaat 229  Q
    ||||| |||||||||||| |||| |||||| | || | ||||||||||||||||| || |||||| |||||||||||||||||||| ||||  |||||||    
T  29979597 agggtccgtttgatggtcaggatcgggagaca-gaaatgatacattaatcatatcatgtttaaatctcatgtttgatgcaccaaagggatatgataaaat 29979499  T
Q  230 aaatcattt 238  Q
    ||| |||||    
T  29979498 aaaccattt 29979490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 9314806 - 9314865
Alignment:
Q  168 gatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaa 227  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||  ||||| |||||    
T  9314806 gatacattaatcatatcctgcttaaatctcatgtttgatgcaccaaatggataggataaa 9314865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 32329317 - 32329418
Alignment:
Q  136 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatca 235  Q
    |||||||||||| ||||||||||  |  ||| |||||||||||| ||| ||| ||||||  ||||||||||||||||||| ||||  |||||||||| ||    
T  32329317 cgtttgatggtcaggatagggaggcagaatatgatacattaatcgtattctgtttaaatcgcatgtttgatgcaccaaag-gatatgataaaataaacca 32329415  T
Q  236 ttt 238  Q
    |||    
T  32329416 ttt 32329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 10789618 - 10789545
Alignment:
Q  137 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcac 210  Q
    ||||||||||| |||||  |||| |  ||| |||||||||||||||| ||||||||||||||| ||||||||||    
T  10789618 gtttgatggtcaggataaagagacagaatatgatacattaatcatattctgcttaaatttcatatttgatgcac 10789545  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 12267316 - 12267413
Alignment:
Q  138 tttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatca 235  Q
    |||||| ||| | ||| ||||| ||||||  ||| |||||| |||||||| |||||||| |||||||||||||||||  ||||  || ||||||||||    
T  12267316 tttgattgtcagaatatggagacatgatattatatattaattatatcctgtttaaattttatgtttgatgcaccaaacagatatgatgaaataaatca 12267413  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 49549473 - 49549582
Alignment:
Q  129 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaa 228  Q
    |||||| |||||||||||| |||||| |||  | |||| ||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||||||    
T  49549473 aagggtccgtttgatggtcaggatagtgaggcaagatatgatacattaatcatatcctgcttaaatctcatatttgatgcaccaaagggataggataaaa 49549572  T
Q  229 taaatcattt 238  Q
    ||||||||||    
T  49549573 taaatcattt 49549582  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 232
Target Start/End: Complemental strand, 28623108 - 28623012
Alignment:
Q  136 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaa 232  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||||||||  ||||||| ||||||||||||||||||| ||||| ||||||||||    
T  28623108 cgtttgatggtcaggatagggagacatgatatgatacattaatcatatcctatttaaattccatgtttgatgcaccaaagggatagaataaaataaa 28623012  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 37347213 - 37347105
Alignment:
Q  130 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaat 229  Q
    ||||| |||||||||||| ||||||||||| |  ||| ||||||||||||||||| ||||||||| | |||||||||||||||||| ||||  |||||||    
T  37347213 agggtgcgtttgatggtcaggatagggagacagaatatgatacattaatcatatcttgcttaaatcttatgtttgatgcaccaaagggatatgataaaat 37347114  T
Q  230 aaatcattt 238  Q
    ||| |||||    
T  37347113 aaaccattt 37347105  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 19909968 - 19910068
Alignment:
Q  136 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatca 235  Q
    |||||||||||  |||||| |||| |  ||| ||||||||||| ||||  ||||||||| |||||||||||||| ||||| ||||  |||||||||| ||    
T  19909968 cgtttgatggttaggatagagagaca--atatgatacattaattatattgtgcttaaatatcatgtttgatgcatcaaagagataagataaaataaacca 19910065  T
Q  236 ttt 238  Q
    |||    
T  19910066 ttt 19910068  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 48527377 - 48527446
Alignment:
Q  163 gatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaa 232  Q
    |||| |||| ||| |||||||| |||||||||||||||||||||||| ||||  ||||  ||||||||||    
T  48527377 gatatgatatatttatcatatcttgcttaaatttcatgtttgatgcatcaaaaagatatgataaaataaa 48527446  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 52267631 - 52267692
Alignment:
Q  177 atcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatcattt 238  Q
    ||||||| || ||||||||||||||| |||| ||||||| ||||  ||||||||||||||||    
T  52267631 atcatattctacttaaatttcatgttcgatgtaccaaagagatatgataaaataaatcattt 52267692  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 10306987 - 10306886
Alignment:
Q  137 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatcat 236  Q
    ||||||||||| | ||||| | ||||||||  ||| |||||||||||  | | ||||| |||||||||||||| ||||  || || |||||||||| |||    
T  10306987 gtttgatggtcagtataggaaaatatgatataatatattaatcatattattcataaatctcatgtttgatgcatcaaatagagagaataaaataaaccat 10306888  T
Q  237 tt 238  Q
    ||    
T  10306887 tt 10306886  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 136 - 238
Target Start/End: Complemental strand, 18503274 - 18503172
Alignment:
Q  136 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatca 235  Q
    ||||||||||||  ||||| |||||  |||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| ||    
T  18503274 cgtttgatggtcatgatagagagatcggatatgatacattaatcatatcctgcttaaatatcatgtttgatgcaccaaagagataggataaaataaacca 18503175  T
Q  236 ttt 238  Q
    |||    
T  18503174 ttt 18503172  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 15673149 - 15673046
Alignment:
Q  137 gtttgatggtccggatagggagatatgatacgatacattaatcatat--cctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatc 234  Q
    |||||||||||  |||||||||  | |||| ||||||||||||||||  ||||||||||| |||||||||||||||||||| ||||| |||||||||| |    
T  15673149 gtttgatggtcaagatagggaggcaggatatgatacattaatcatatatcctgcttaaatctcatgtttgatgcaccaaagagataggataaaataaacc 15673050  T
Q  235 attt 238  Q
    ||||    
T  15673049 attt 15673046  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 3480908 - 3480820
Alignment:
Q  151 atagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtata-aaataaatcattt 238  Q
    |||| ||||||||||| |||| |||||||||||| ||| ||||| |||||||| ||||| || ||||||| |||| |||||||||||||    
T  3480908 atagagagatatgatatgatatattaatcatatcatgcataaatctcatgtttaatgcatcatagtgataatatagaaataaatcattt 3480820  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 25102600 - 25102707
Alignment:
Q  136 cgtttgatggtccggatagggaga-----tatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaata 230  Q
    |||||||||||| |||||||||||     ||||||| |||| ||| |||| || || ||||||| |||||||||||||||||||  ||||| ||||||||    
T  25102600 cgtttgatggtcgggatagggagacatgatatgatatgatatatttatcacattctacttaaatctcatgtttgatgcaccaaatagataggataaaata 25102699  T
Q  231 aatcattt 238  Q
    ||| ||||    
T  25102700 aattattt 25102707  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 24429450 - 24429348
Alignment:
Q  130 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaat 229  Q
    |||||| ||||||||||| |||||| ||| || |||| || | ||  ||||||||||| ||||||  |||||||||||||| |||| ||||| |||||||    
T  24429450 agggtttgtttgatggtcaggatagagagttaagatatgacatatctatcatatcctgtttaaatcacatgtttgatgcactaaagggataggataaaat 24429351  T
Q  230 aaa 232  Q
    |||    
T  24429350 aaa 24429348  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 34703033 - 34703079
Alignment:
Q  168 gatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaa 214  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||    
T  34703033 gatacattaatcatatcctgcttaaatcacatgtttgatgcaccaaa 34703079  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 32585946 - 32585842
Alignment:
Q  134 ttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaat 233  Q
    |||||||||||| |  |||||||||  |  ||| ||||||  |||||||||||| |||||| |||||||||||||| |||| |||||  |||||||||||    
T  32585946 ttcgtttgatggccacgatagggaggcaaaatatgatacaagaatcatatcctgtttaaatctcatgtttgatgcaacaaaatgatatgataaaataaat 32585847  T
Q  234 cattt 238  Q
     ||||    
T  32585846 aattt 32585842  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 6110160 - 6110209
Alignment:
Q  189 ttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatcattt 238  Q
    |||||| |||||||||||||| ||||| ||||  ||||||||||||||||    
T  6110160 ttaaatctcatgtttgatgcatcaaagggataagataaaataaatcattt 6110209  T

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Target: scaffold0817 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0817
Description:

Target: scaffold0817; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 62 - 1
Alignment:
Q  136 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttc 197  Q
    |||||||||| | ||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  62 cgtttgatggccaggatagggagacatgatatgatacattaatcatattctgcttaaatttc 1  T

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Target: scaffold0702 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 4127 - 4089
Alignment:
Q  177 atcatatcctgcttaaatttcatgtttgatgcaccaaag 215  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  4127 atcatatccggcttaaatatcatgtttgatgcaccaaag 4089  T

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Target: scaffold0662 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 3975 - 4013
Alignment:
Q  177 atcatatcctgcttaaatttcatgtttgatgcaccaaag 215  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  3975 atcatatccggcttaaatatcatgtttgatgcaccaaag 4013  T

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Target: scaffold0957 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 1659 - 1724
Alignment:
Q  173 attaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgatagtataaaataaatcattt 238  Q
    |||||||||||| |  |||||| | ||||||| |||||||||| ||||| || |||||||||||||    
T  1659 attaatcatatcttatttaaatcttatgtttggtgcaccaaagagataggatgaaataaatcattt 1724  T

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