View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2534_high_4 (Length: 632)
Name: NF2534_high_4
Description: NF2534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2534_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Complemental strand, 5053686 - 5053240
Alignment:
| Q |
18 |
ctttgtaacttattgtcttgttaatcggaactcccttccaagaacacaatgatttgatttcttgactgtgaatcaaccaaccatatgaagaccaaaacca |
117 |
Q |
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| T |
5053686 |
ctttgtaacttattgtctcgttaatcggaactcccttccaagaatacaatgatttgatttcttggctgtgaatcaaccaaccatatgaagaccaaaacca |
5053587 |
T |
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| Q |
118 |
aaccccttttgagagccagcataagagaattgtgaaatggagcagtgaaacaactacttattatataaagaaagttggattcatggtaaactcggtcatt |
217 |
Q |
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| T |
5053586 |
aaccccttttgagagccaatataagagaattgtgaaatggagcagtgaaacaaccactgattatataaagaaagttggattcatggtaaactcggtcatt |
5053487 |
T |
|
| Q |
218 |
tctaggtcaaggttcatgttcatactctccaaatgattatgaaacgaatgaaag--nnnnnnnnntcatcaaatcaagcaacaaagtcattccatgttaa |
315 |
Q |
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| T |
5053486 |
tctaggtcaaggttcatgttcatactctccaaatgattatgaaacaaatgaaagaaaaaaaataatcagcaaatcaagcaacaaagtcattccttgttaa |
5053387 |
T |
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| Q |
316 |
atttcttacacgcatcttataacatggttggatgaagattaaatgaacacattcttgtgaaatttgcctgtcaattattttgannnnnnncgtttcttgt |
415 |
Q |
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| T |
5053386 |
atttcttacacgcatcttataacatggttggatgaagattaaatgaacacattcttgtgaaatttgcctgtcaattattttgattttttt-gtttcttgt |
5053288 |
T |
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| Q |
416 |
tggttttgaatttaaaatgatgtcattgaactatcgctgcatacattc |
463 |
Q |
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| T |
5053287 |
tggttttgaatttaaaatgatttcattgaactatccctgcatacattc |
5053240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 484 - 617
Target Start/End: Complemental strand, 5053171 - 5053038
Alignment:
| Q |
484 |
gtaatttttggtgaatgttaataatggttccaccagaattcacaaatttttggtcacaacttttaagttaaaccacgtttcatcgtagcaaacgtatcca |
583 |
Q |
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| T |
5053171 |
gtaatttttggtgaatgttaataatggttccaccagaattcacaaatttttggtcacaacttttaagttaaaccacgtttcatcgtagcaaacgtatcca |
5053072 |
T |
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| Q |
584 |
aactagcacagatcgattactttaaacgcatgat |
617 |
Q |
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| T |
5053071 |
aactagcacagatcgattactttaaacgaatgat |
5053038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 108 - 232
Target Start/End: Complemental strand, 30767911 - 30767785
Alignment:
| Q |
108 |
accaaaaccaaaccccttttgagagccagcataagagaattgtgaaatggagcagtgaaacaactacttattatataaagaaagttggattcatggtaaa |
207 |
Q |
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| T |
30767911 |
accaaaaccaaaccttttttgagaaccaatatcatagaattgagaattggaacaatgaaacaaccaatgattatataaagaaagttggattcatggtaaa |
30767812 |
T |
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| Q |
208 |
ct--cggtcatttctaggtcaaggttc |
232 |
Q |
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|| | |||||||||||| |||||||| |
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| T |
30767811 |
ctcacagtcatttctaggccaaggttc |
30767785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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