View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2534_high_9 (Length: 391)
Name: NF2534_high_9
Description: NF2534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2534_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 12 - 372
Target Start/End: Complemental strand, 21115837 - 21115477
Alignment:
| Q |
12 |
tcatcaaatcttctgttggtatgtgatagtcttctggaaaaagagtacacatcattaagagcaattgtgcgtgctgcctttgcaaataatcatagcttaa |
111 |
Q |
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| T |
21115837 |
tcatcaaatcttctgttgggatgtgatagtcttctggaaaaagagtacaaatcattaagagtagctgtgtgtactgcctttgcaaataatcatagcttaa |
21115738 |
T |
|
| Q |
112 |
tttaaggcaacttaaagtagtccttactcctccttcatcattagatgcttttgaatccctcaacttatcaaacgcctgctgccacaactcaatttcatgc |
211 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
21115737 |
tttaaggcaacttaaagtagtcctcactcctccttcatcattggatgcctttgaatccctcaacttatctaacgcctgctgccacaactcaatttcatgc |
21115638 |
T |
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| Q |
212 |
cttccttttaaggacgaccctatagttttgattgataagggaagtccattacactcattgcagacttcccgtggcacaccatccaataacttggagtatt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21115637 |
cttccttttaaggacgaccctatagttttgattgataagggaagtccattacactcattgcagacttcccgtggcacaccatccaataacttggagtatt |
21115538 |
T |
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| Q |
312 |
cgtcatcaattcttgcaaacttttggaataatgtccaagattcatcttcagacaagagccc |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21115537 |
cgtcatcaattcttgcaaacttttggaataatgtccaagattcatcttcagacaagagccc |
21115477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 233 - 372
Target Start/End: Complemental strand, 21123043 - 21122904
Alignment:
| Q |
233 |
atagttttgattgataagggaagtccattacactcattgcagacttcccgtggcacaccatccaataacttggagtattcgtcatcaattcttgcaaact |
332 |
Q |
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||||||||||||| |||||||||||| || || |||| ||||| ||| |||| |||||||| ||| || ||| |||||||||||||| ||||| || |
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| T |
21123043 |
atagttttgattgctaagggaagtcccttgcattcatagcagatttcttgtggtacaccatctaatgacacagagaattcgtcatcaattactgcaagct |
21122944 |
T |
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| Q |
333 |
tttggaataatgtccaagattcatcttcagacaagagccc |
372 |
Q |
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||||||| |||||||| |||||||||| ||||||||||| |
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| T |
21122943 |
tttggaagaatgtccaggattcatctttggacaagagccc |
21122904 |
T |
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