View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2534_low_1 (Length: 1137)
Name: NF2534_low_1
Description: NF2534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2534_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 574; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 484 - 1121
Target Start/End: Complemental strand, 5053171 - 5052535
Alignment:
| Q |
484 |
gtaatttttggtgaatgttaataatggttccaccagaattcacaaatttttggtcacaacttttaagttaaaccacgtttcatcgtagcaaacgtatcca |
583 |
Q |
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| T |
5053171 |
gtaatttttggtgaatgttaataatggttccaccagaattcacaaatttttggtcacaacttttaagttaaaccacgtttcatcgtagcaaacgtatcca |
5053072 |
T |
|
| Q |
584 |
aactagcacagatcgattactttaaacgcatgattattacacacacgatgctccacttcttgagtaaggcgggaaatgaaacagttctgctatgcaaagg |
683 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5053071 |
aactagcacagatcgattactttaaacgaatgattattacacacacgatgctccacttcttgagtaaggtgggaaatgaaacagttctgctatgcaaagg |
5052972 |
T |
|
| Q |
684 |
atgttccagaaaaacattaatatacaaagagtattttagaaaggtcttcacacaaattagacgcattaagttcactacaaaattttcttaatatataggg |
783 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5052971 |
atgttccagaaaaacattaatatacaaagagtattttagaaaggtcttcacacaaattagacgcatcaagttcactacaaaattttcttaatatataggg |
5052872 |
T |
|
| Q |
784 |
agaaaaaatagatacttatacaatttgaaacagatggtaacatannnnnnnnnctcgaacaaggcaaactaacgaaccgaagttggatggtagcataaat |
883 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
5052871 |
agaaaaaatagatacttatacaatttgaaacagatggtagcata-ttttttttctcgaacaaggcaaactaatgaaccgaaattggatggtagcataaat |
5052773 |
T |
|
| Q |
884 |
taatatgaatttaccatagtaaaatatcaattcctataatttcagcactcagcatctttgaagtgagggtacttgtaaaacagtgaagtactagtacttg |
983 |
Q |
| |
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| T |
5052772 |
taatatgaatttaccatagtaaaatatcaattcctataatttcaacactcagcatctttgaagtgagggtacttgtaaaacagtgaagtactagtacttg |
5052673 |
T |
|
| Q |
984 |
taagttgtaacacaccatagattcacaactactagaatcttttcaatatttaaagggaaaacaaatctgaatatcacaaacatatgaacatacacttaaa |
1083 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5052672 |
taagttgtaacacaccatagattcacaactactagaagcttttcaatatttaaagggaaaacaaatctgaatatcacaaacatatgaacatacacttaaa |
5052573 |
T |
|
| Q |
1084 |
aatcgaaatactagtagagtatttcacaatccacctga |
1121 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
5052572 |
aatcgaaatactagtagagtatttcacaatccacctga |
5052535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Complemental strand, 5053686 - 5053240
Alignment:
| Q |
18 |
ctttgtaacttattgtcttgttaatcggaactcccttccaagaacacaatgatttgatttcttgactgtgaatcaaccaaccatatgaagaccaaaacca |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5053686 |
ctttgtaacttattgtctcgttaatcggaactcccttccaagaatacaatgatttgatttcttggctgtgaatcaaccaaccatatgaagaccaaaacca |
5053587 |
T |
|
| Q |
118 |
aaccccttttgagagccagcataagagaattgtgaaatggagcagtgaaacaactacttattatataaagaaagttggattcatggtaaactcggtcatt |
217 |
Q |
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| T |
5053586 |
aaccccttttgagagccaatataagagaattgtgaaatggagcagtgaaacaaccactgattatataaagaaagttggattcatggtaaactcggtcatt |
5053487 |
T |
|
| Q |
218 |
tctaggtcaaggttcatgttcatactctccaaatgattatgaaacgaatgaaag--nnnnnnnnntcatcaaatcaagcaacaaagtcattccatgttaa |
315 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||| |||||| |
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| T |
5053486 |
tctaggtcaaggttcatgttcatactctccaaatgattatgaaacaaatgaaagaaaaaaaataatcagcaaatcaagcaacaaagtcattccttgttaa |
5053387 |
T |
|
| Q |
316 |
atttcttacacgcatcttataacatggttggatgaagattaaatgaacacattcttgtgaaatttgcctgtcaattattttgannnnnnncgtttcttgt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5053386 |
atttcttacacgcatcttataacatggttggatgaagattaaatgaacacattcttgtgaaatttgcctgtcaattattttgattttttt-gtttcttgt |
5053288 |
T |
|
| Q |
416 |
tggttttgaatttaaaatgatgtcattgaactatcgctgcatacattc |
463 |
Q |
| |
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||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
5053287 |
tggttttgaatttaaaatgatttcattgaactatccctgcatacattc |
5053240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 108 - 232
Target Start/End: Complemental strand, 30767911 - 30767785
Alignment:
| Q |
108 |
accaaaaccaaaccccttttgagagccagcataagagaattgtgaaatggagcagtgaaacaactacttattatataaagaaagttggattcatggtaaa |
207 |
Q |
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|||||||||||||| |||||||| ||| || | ||||||| ||| |||| || ||||||||| | | ||||||||||||||||||||||||||||||| |
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| T |
30767911 |
accaaaaccaaaccttttttgagaaccaatatcatagaattgagaattggaacaatgaaacaaccaatgattatataaagaaagttggattcatggtaaa |
30767812 |
T |
|
| Q |
208 |
ct--cggtcatttctaggtcaaggttc |
232 |
Q |
| |
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|| | |||||||||||| |||||||| |
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| T |
30767811 |
ctcacagtcatttctaggccaaggttc |
30767785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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