View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2534_low_10 (Length: 402)
Name: NF2534_low_10
Description: NF2534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2534_low_10 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 27836 - 27966
Alignment:
| Q |
13 |
gcataggggttgttgtgccattttttaagtatagaaatcatataaaatgtcatgccgtgtgctccctttaactgataactacgnnnnnnnnnagtttaat |
112 |
Q |
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| T |
27836 |
gcattggggttgttgtgcctttttttaagtatagaaatcaaatacaatgtcatgccccgtgctccctttaactgatgactacg-ttttttttagtttaat |
27934 |
T |
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| Q |
113 |
ttagtttaaatgattgaatcaaagtgtttgtc |
144 |
Q |
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| T |
27935 |
ttagtttaaatgattgaatcaaagtgtttgtc |
27966 |
T |
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Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 13796148 - 13796269
Alignment:
| Q |
12 |
agcataggggttgttgtgccattttttaagtatagaaatcatataaaatgtcatgccgtgtgctccctttaactgataactacgnnnnnnnnnagtttaa |
111 |
Q |
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| T |
13796148 |
agcattggggttgttgtgcctttttttaagtatagaaatcaaatacaatgtcatgccctgtgctccctttaactgataactac-----------gttttt |
13796236 |
T |
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| Q |
112 |
tttagtttaaatgattgaatcaaagtgtttgtc |
144 |
Q |
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| T |
13796237 |
tttagtttaaatgattgaatcaaagtgtttgtc |
13796269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 47287652 - 47287716
Alignment:
| Q |
125 |
attgaatcaaagtgtttgtcttaccatgcatagaggcatgattgttaatcgttgttttttggtat |
189 |
Q |
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| T |
47287652 |
attgaagcaaagtgtttgtctgaccatgcatagaggtatgattgttaatcgttggtttttagtat |
47287716 |
T |
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