View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2534_low_12 (Length: 379)
Name: NF2534_low_12
Description: NF2534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2534_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 14908208 - 14908473
Alignment:
| Q |
16 |
caaaggaagcgtcaaaaggggatgttcgtaaagtccctcagtcacttatacttaaagttatgaactgggttgaggtagaacaataccatagtaataaaag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14908208 |
caaaggaagcgtcaaaaggggatgttcgtaaagtccctcaatcacttatacttaaagttatgaactgggttgaggtagaacaataccatagtaataaaag |
14908307 |
T |
|
| Q |
116 |
gcctagccatcctaaagcagcacagattgctcggaagttaagaataaaggttaagaacccttgatactttgttcaaacgatgatgaactattttcaactt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14908308 |
gcctagccatcctaaagcagcacagattgctcggaagttaagaataaaggttaagaacccttgatactttgttcaaacgatgatgaactattttcaactt |
14908407 |
T |
|
| Q |
216 |
gagtgtgtattgtgtttgccgtttggaataatagttgtgagatactcgatcatcaaaacacagtccgagggta |
288 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14908408 |
gagtgtgtattgt-------gtttggaataatagttgtgagatactcgatcatcaaaatacagtccgagggta |
14908473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 14901445 - 14901621
Alignment:
| Q |
16 |
caaaggaagcgtcaaaaggggatgttcgtaaagtccctcagtcacttatacttaaagttatgaactgggttgaggtagaacaataccatagtaataaaag |
115 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14901445 |
caaaggaagagtcaaaaggggatgttcgtaaagtccctcaatcacttatacttaaagttatgaactgggttgaggtagaacaataccatagtaataagag |
14901544 |
T |
|
| Q |
116 |
gcctagccatcctaaagcagcacagattgctcggaagttaagaataaaggttaagaacccttgatactttgttcaaa |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
14901545 |
gcctagccatcctaaagcagcacagattgctcggaagttgagaataaagattaagaacccttgatacgttgttcaaa |
14901621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 14908508 - 14908548
Alignment:
| Q |
323 |
gaagctgctattcttgatgtatcaattagtcttgtagaatc |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14908508 |
gaagctgctattcttgatgtatcaattagtcttgtagaatc |
14908548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University