View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2534_low_15 (Length: 317)

Name: NF2534_low_15
Description: NF2534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2534_low_15
NF2534_low_15
[»] chr3 (15 HSPs)
chr3 (19-303)||(5502712-5502995)
chr3 (19-132)||(5446333-5446446)
chr3 (19-132)||(5490070-5490182)
chr3 (19-132)||(5454892-5455005)
chr3 (200-303)||(5454692-5454796)
chr3 (200-303)||(5446110-5446213)
chr3 (19-119)||(5484688-5484788)
chr3 (19-132)||(20343511-20343625)
chr3 (261-303)||(5489887-5489929)
chr3 (19-92)||(5854275-5854348)
chr3 (24-119)||(5525734-5525827)
chr3 (139-213)||(5446222-5446299)
chr3 (251-303)||(5849200-5849252)
chr3 (268-303)||(5828424-5828459)
chr3 (252-303)||(20343345-20343396)
[»] chr6 (3 HSPs)
chr6 (19-132)||(25809366-25809479)
chr6 (200-303)||(25809599-25809702)
chr6 (139-213)||(25809513-25809590)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 5502995 - 5502712
Alignment:
Q  19 acggctggcatcttcagaacttggtattttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtg 118  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||    
T  5502995 acggctggcatcttcagagcttggtattttcatttgctattacatattttgtcctttcagttagatata--gcataaatttacatatttcaccatttgtg 5502898  T
Q  119 ttgatattattaaggaccagtaaattctcatttcactttcaagtaactatatacctgagctattt-taagaaaaagttgtgttcaacttccaaatggatg 217  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||| |    
T  5502897 ttgatattattatggaccagtaaattctcatttcactttcaagtaactatttaccagagctatttctaagaaaaagttgtgttcaacttccaaatggaag 5502798  T
Q  218 ttttgttctctatagatgnnnnnnncttctctttagtatgctcctataccttcttgttgactgacattaacttcaaccctcagatc 303  Q
    ||||||||||||| ||||       |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  5502797 ttttgttctctatcgatgtttttttcttctctttagtatactcctataccttcttgttgactgacattaatttcaaccctcagatc 5502712  T

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Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 5446446 - 5446333
Alignment:
Q  19 acggctggcatcttcagaacttggtattttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5446446 acggctggcatcttcagaacttggtattttcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtg 5446347  T
Q  119 ttgatattattaag 132  Q
    ||||||||||||||    
T  5446346 ttgatattattaag 5446333  T

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Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 5490182 - 5490070
Alignment:
Q  19 acggctggcatcttcagaacttggtattttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtg 118  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  5490182 acggatggcatcttcagaacttggtattttcatttcttattacatattttgtcttttcagttagatatatagcataaattta-atatttcaccatttgtg 5490084  T
Q  119 ttgatattattaag 132  Q
    ||||||||||||||    
T  5490083 ttgatattattaag 5490070  T

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Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 5455005 - 5454892
Alignment:
Q  19 acggctggcatcttcagaacttggtattttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtg 118  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||| ||| |||||||||||||||||||||||| ||| ||||||||||||||||     
T  5455005 acggatggcatcttcagaacttggtattttcttttcttattacatattttgtcttttcagttagatatatagcataaacttatatatttcaccatttgtc 5454906  T
Q  119 ttgatattattaag 132  Q
    ||||||||||||||    
T  5454905 ttgatattattaag 5454892  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 200 - 303
Target Start/End: Complemental strand, 5454796 - 5454692
Alignment:
Q  200 tcaacttccaaatggatgttttgttctctatagatgnnnnnnncttctctttagtatgctcctataccttcttgtt-gactgacattaacttcaaccctc 298  Q
    |||||||||| ||||| ||| |||||||||||||||       ||||| ||||||| ||| ||||||||||||||| |||||||||||||||||||||||    
T  5454796 tcaacttccagatggaagttgtgttctctatagatgcatttctcttctttttagtaagcttctataccttcttgtttgactgacattaacttcaaccctc 5454697  T
Q  299 agatc 303  Q
    |||||    
T  5454696 agatc 5454692  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 200 - 303
Target Start/End: Complemental strand, 5446213 - 5446110
Alignment:
Q  200 tcaacttccaaatggatgttttgttctctatagatgnnnnnnncttctctttagtatgctcctataccttcttgttgactgacattaacttcaaccctca 299  Q
    |||||| ||||||||| | | ||||||| |||||||       ||||||||||||| ||| |||||||  ||||||||||||||||||||||||||||||    
T  5446213 tcaactcccaaatggaagctgtgttctccatagatgtttttttcttctctttagtaagcttctataccagcttgttgactgacattaacttcaaccctca 5446114  T
Q  300 gatc 303  Q
    ||||    
T  5446113 gatc 5446110  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 5484788 - 5484688
Alignment:
Q  19 acggctggcatcttcagaacttggtattttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtg 118  Q
    |||||||||||||||||||||||||||||||||||   |  ||||||||  ||  |||||| |||||||||||| |||||||  ||||||| ||||||||    
T  5484788 acggctggcatcttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatatagcacaaatttatttatttcatcatttgtg 5484689  T
Q  119 t 119  Q
    |    
T  5484688 t 5484688  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 20343625 - 20343511
Alignment:
Q  19 acggctggcatcttcagaacttggtattttcatttgttattacatatttagtccttt-cagttagatatatagcataaattt-acatatttcaccatttg 116  Q
    |||||| ||||||||||||||||||||||||||||  |||||||| |||  |||||| ||||||||||||| ||| |||||| | |||||||| |||||     
T  20343625 acggctagcatcttcagaacttggtattttcatttcctattacatcttt-ttcctttccagttagatatattgcacaaatttcatatatttcagcattta 20343527  T
Q  117 tgttgatattattaag 132  Q
    | |||||| |||||||    
T  20343526 tcttgatagtattaag 20343511  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 303
Target Start/End: Complemental strand, 5489929 - 5489887
Alignment:
Q  261 ctataccttcttgttgactgacattaacttcaaccctcagatc 303  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  5489929 ctataccttcttgttgactgacattaacttcaaccctcagatc 5489887  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 5854275 - 5854348
Alignment:
Q  19 acggctggcatcttcagaacttggtattttcatttgttattacatatttagtcctttcagttagatatatagca 92  Q
    ||||||||||||||||||||||||||||| |||||  |||||||| ||| | | |||||||  |||||||||||    
T  5854275 acggctggcatcttcagaacttggtatttacatttcctattacatcttttgccttttcagtctgatatatagca 5854348  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 5525827 - 5525734
Alignment:
Q  24 tggcatcttcagaacttggtattttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt 119  Q
    ||||||||||||||||||||||||| | ||  ||| ||||||||   | |||||||||||||||||||  | ||||| |||||||| |||||||||    
T  5525827 tggcatcttcagaacttggtattttaacttcctatcacatatttttccttttcagttagatatatagc--acatttatatatttcatcatttgtgt 5525734  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 5446299 - 5446222
Alignment:
Q  139 taaattctcatttcactttcaagtaactatatacctgagctatttt---aagaaaaagttgtgttcaacttccaaatg 213  Q
    ||||||||| ||||||||| | |||| |||||||||||||| || |   ||||| |||||||||||||||||||||||    
T  5446299 taaattctcttttcacttttatgtaagtatatacctgagcttttctaagaagaagaagttgtgttcaacttccaaatg 5446222  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 5849200 - 5849252
Alignment:
Q  251 tagtatgctcctataccttcttgttgactgacattaacttcaaccctcagatc 303  Q
    ||||| ||| |||||||||||||||| |||||||| | |||||||||||||||    
T  5849200 tagtaagcttctataccttcttgttggctgacatttatttcaaccctcagatc 5849252  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 303
Target Start/End: Original strand, 5828424 - 5828459
Alignment:
Q  268 ttcttgttgactgacattaacttcaaccctcagatc 303  Q
    |||||||||||||||||| |||||||||||||||||    
T  5828424 ttcttgttgactgacatttacttcaaccctcagatc 5828459  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 303
Target Start/End: Complemental strand, 20343396 - 20343345
Alignment:
Q  252 agtatgctcctataccttcttgttgactgacattaacttcaaccctcagatc 303  Q
    |||| ||| |||||||| |||||||||||||||| | |||||||||||||||    
T  20343396 agtaagcttctatacctgcttgttgactgacatttatttcaaccctcagatc 20343345  T

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Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 25809366 - 25809479
Alignment:
Q  19 acggctggcatcttcagaacttggtattttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25809366 acggctggcatcttcagaacttggtattttcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtg 25809465  T
Q  119 ttgatattattaag 132  Q
    ||||||||||||||    
T  25809466 ttgatattattaag 25809479  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 200 - 303
Target Start/End: Original strand, 25809599 - 25809702
Alignment:
Q  200 tcaacttccaaatggatgttttgttctctatagatgnnnnnnncttctctttagtatgctcctataccttcttgttgactgacattaacttcaaccctca 299  Q
    |||||| ||||||||| | | ||||||| |||||||       ||||||||||||| ||| |||||||  ||||||||||||||||||||||||||||||    
T  25809599 tcaactcccaaatggaagctgtgttctccatagatgtttttttcttctctttagtaagcttctataccagcttgttgactgacattaacttcaaccctca 25809698  T
Q  300 gatc 303  Q
    ||||    
T  25809699 gatc 25809702  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 25809513 - 25809590
Alignment:
Q  139 taaattctcatttcactttcaagtaactatatacctgagctatttt---aagaaaaagttgtgttcaacttccaaatg 213  Q
    ||||||||| ||||||||| | |||| |||||||||||||| || |   ||||| |||||||||||||||||||||||    
T  25809513 taaattctcttttcacttttatgtaagtatatacctgagcttttctaagaagaagaagttgtgttcaacttccaaatg 25809590  T

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