View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2534_low_16 (Length: 276)
Name: NF2534_low_16
Description: NF2534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2534_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 5604180 - 5603915
Alignment:
| Q |
1 |
caatgaatgaagagttaggttgaaaaagaaacttgaaatttagatattatgtccccacccttgtacagttattaattcttccttctacttaaaggtgcca |
100 |
Q |
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| T |
5604180 |
caatgaatgaagagttaggttgaaaaagaaacttgaaatttagatattatgtccccacccttgtacagttattaattcttccttctacttaaaggtgcca |
5604081 |
T |
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| Q |
101 |
agaaatattagatatataacaataggatttgtgaacaagtaaaatagtttagcgtgnnnnnnnacgattgaatcaataaatatctatttaatttaataat |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5604080 |
agaaatattagatatataacaataggttttgtgaacaagtaaaatagtttagcgtgtttttttacgattgaatcaataaatatctatttaatttaataat |
5603981 |
T |
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| Q |
201 |
gagtttattgatcccatgataaaagctaactgatgtgtgatgcaaaacttattttatctgtgctcc |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5603980 |
gagtttattgatcccatgataaaagctaactgatgtgtgatgcaaaacttactttatctgtgctcc |
5603915 |
T |
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