View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2534_low_17 (Length: 275)

Name: NF2534_low_17
Description: NF2534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2534_low_17
NF2534_low_17
[»] chr7 (15 HSPs)
chr7 (18-249)||(2326320-2326553)
chr7 (18-249)||(2322032-2322263)
chr7 (18-245)||(2330646-2330873)
chr7 (18-229)||(2338502-2338713)
chr7 (18-248)||(3954367-3954597)
chr7 (18-248)||(2335191-2335422)
chr7 (18-246)||(1556617-1556845)
chr7 (18-249)||(1549794-1550025)
chr7 (18-246)||(1089373-1089601)
chr7 (18-246)||(1605100-1605328)
chr7 (20-249)||(3853356-3853585)
chr7 (18-246)||(1563873-1564101)
chr7 (23-246)||(1540572-1540795)
chr7 (18-225)||(1597126-1597333)
chr7 (18-246)||(1106713-1106941)
[»] chr8 (4 HSPs)
chr8 (18-242)||(18738456-18738680)
chr8 (18-242)||(18743420-18743644)
chr8 (18-242)||(18748387-18748611)
chr8 (23-163)||(18722814-18722954)
[»] scaffold0491 (1 HSPs)
scaffold0491 (18-242)||(5228-5452)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 2326320 - 2326553
Alignment:
Q  18 atgtgaagtattagaccaacgtctcccacttccgaataatatgatggttttacttgacata--attcgtgttgccgtagtagcatttgcgtgcttaaatc 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||| ||||||||||||| | ||||||||    
T  2326320 atgtgaagtattagaccaacgtctcccacttctgaataatatgatggttttacttgacatataattcgtgttgccttagtagcatttgcatacttaaatc 2326419  T
Q  116 tcaacccttcctctcgaccaacaatgaaatgtgtgtcacagagttttgccattgaacttataccatcaagcattttttcgagtgaaatttcagtgcagca 215  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| |||||||||||||||||||||||||    
T  2326420 tcaatcctttctctcgaccaacaatgaaatgtgtgtcacagagttttgccattgaacctacaccatcaagtattctttcgagtgaaatttcagtgcagca 2326519  T
Q  216 actcatgagtcaaggactaaaaacattatttcat 249  Q
    |||||||||||||| |||||||| ||||||||||    
T  2326520 actcatgagtcaagaactaaaaatattatttcat 2326553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 2322032 - 2322263
Alignment:
Q  18 atgtgaagtattagaccaacgtctcccacttccgaataatatgatggttttacttgacataattcgtgttgccgtagtagcatttgcgtgcttaaatctc 117  Q
    |||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||  | |||||||||| ||||||||||||    
T  2322032 atgtgaagtattagaccaacgtcttctacttccgaataatgtgatggttttacttgacataattcgtgttgccacaatagcatttgcttgcttaaatctc 2322131  T
Q  118 aacccttcctctcgaccaacaatgaaatgtgtgtcacagagttttgccattgaacttataccatcaagcattttttcgagtgaaatttcagtgcagcaac 217  Q
    || |||| ||||||||||||||||||||||| ||||||||||||| ||| |||||||| ||||| |||||||  || |||||||||||| ||||||||||    
T  2322132 aatcctttctctcgaccaacaatgaaatgtgcgtcacagagtttttccactgaacttacaccattaagcattcctttgagtgaaatttctgtgcagcaac 2322231  T
Q  218 tcatgagtcaaggactaaaaacattatttcat 249  Q
    | |||||||||| | ||||| |||||||||||    
T  2322232 tgatgagtcaagaattaaaagcattatttcat 2322263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 2330646 - 2330873
Alignment:
Q  18 atgtgaagtattagaccaacgtctcccacttccgaataatatgatggttttacttgacataattcgtgttgccgtagtagcatttgcgtgcttaaatctc 117  Q
    ||||||||||||||||||||||||||||||||| |||||| | | ||||||||| |||||||||||||||||||||||||||||||  ||||||||||||    
T  2330646 atgtgaagtattagaccaacgtctcccacttccaaataatgtaaaggttttactggacataattcgtgttgccgtagtagcatttggatgcttaaatctc 2330745  T
Q  118 aacccttcctctcgaccaacaatgaaatgtgtgtcacagagttttgccattgaacttataccatcaagcattttttcgagtgaaatttcagtgcagcaac 217  Q
    ||||||| | |||||||| |||||||| |||||||||||||||||| ||| || |||  ||||  || ||||   | |||||||||||||||||||||||    
T  2330746 aacccttgcgctcgaccatcaatgaaaagtgtgtcacagagttttgtcatagagcttgcaccactaaacattccgttgagtgaaatttcagtgcagcaac 2330845  T
Q  218 tcatgagtcaaggactaaaaacattatt 245  Q
    |||||||||| | ||| ||| |||||||    
T  2330846 tcatgagtcatgaactcaaagcattatt 2330873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 2338502 - 2338713
Alignment:
Q  18 atgtgaagtattagaccaacgtctcccacttccgaataatatgatggttttacttgacataattcgtgttgccgtagtagcatttgcgtgcttaaatctc 117  Q
    |||||||||||||||||| |||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  2338502 atgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgccgtagtagcatttggatgcttaaatctc 2338601  T
Q  118 aacccttcctctcgaccaacaatgaaatgtgtgtcacagagttttgccattgaacttataccatcaagcattttttcgagtgaaatttcagtgcagcaac 217  Q
    ||||||| | |||||||| |||||||| |||||||||||||||||| |   ||  ||  ||||| || | || | | | |||||||||||||||||||||    
T  2338602 aacccttgcgctcgaccatcaatgaaaagtgtgtcacagagttttgtcccagagattgcaccattaaactttctgttgggtgaaatttcagtgcagcaac 2338701  T
Q  218 tcatgagtcaag 229  Q
    ||||||||||||    
T  2338702 tcatgagtcaag 2338713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 3954597 - 3954367
Alignment:
Q  18 atgtgaagtattagaccaacgtctcccacttccgaataatatgatggttttacttgacataattcgtgttgccgtagtagcatttgcgtgcttaaatctc 117  Q
    ||||||||||||||||||||||||||||||||| ||| || |||  ||||||||||||||||||| |||||  |||||||||| ||| ||||||||||      
T  3954597 atgtgaagtattagaccaacgtctcccacttccaaatgatgtgaaagttttacttgacataattcatgttgttgtagtagcatctgcatgcttaaatcca 3954498  T
Q  118 aacccttcctctcgaccaacaatgaaatgtgtgtcacagagttttgccattgaacttataccatcaagcattttttcgagtgaaatttcagtgcagcaac 217  Q
    || ||||||||| |||||||||||||| |||||||||| |||||| |||||||  ||| ||||| |||||||  || ||| |||||||||||| ||||||    
T  3954497 aatccttcctctagaccaacaatgaaaagtgtgtcacaaagtttttccattgaggttacaccattaagcattcctttgagagaaatttcagtgaagcaac 3954398  T
Q  218 tcatgagtcaaggactaaaaacattatttca 248  Q
    || ||| ||||| ||| ||| ||||||||||    
T  3954397 tcgtgaatcaagaactcaaagcattatttca 3954367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 2335191 - 2335422
Alignment:
Q  18 atgtgaagtattagaccaacgtctcccacttccgaataatatgatggttttacttgacataattcgtgttgccgtagtagcatttgcgtgcttaaatctc 117  Q
    ||||||||||||||| |||| || || | |||| |||||| |||||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||    
T  2335191 atgtgaagtattagaacaacatcccctatttccaaataatgtgatggttttacttgacataattcgtgttgtcattgtagcatttgcatgcttaaatctc 2335290  T
Q  118 aacccttcctctcgaccaacaatgaaatgtgtgtca-cagagttttgccattgaacttataccatcaagcattttttcgagtgaaatttcagtgcagcaa 216  Q
    || |||| |||| |||||||||||||||| | ||||  |||||||| ||||||||| || ||||| ||| |||  || |||||| |||||| || |||||    
T  2335291 aatccttgctcttgaccaacaatgaaatgcgcgtcatgagagtttttccattgaacgtacaccattaagtattcctttgagtgatatttcaatgtagcaa 2335390  T
Q  217 ctcatgagtcaaggactaaaaacattatttca 248  Q
    || || ||| ||| ||||||| ||||||||||    
T  2335391 ctaattagtgaagaactaaaagcattatttca 2335422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 1556845 - 1556617
Alignment:
Q  18 atgtgaagtattagaccaacgtctcccacttccgaataatatgatggttttacttgacataattcgtgttgccgtagtagcatttgcgtgcttaaatctc 117  Q
    |||| ||||||||||||| ||||| |||||||| ||||||   || ||| ||| ||||||||||| ||||| ||| || |||||||| ||||||||| ||    
T  1556845 atgtcaagtattagaccagcgtcttccacttccaaataatgacatagttatacgtgacataattcatgttgtcgtggttgcatttgcatgcttaaatatc 1556746  T
Q  118 aacccttcctctcgaccaacaatgaaatgtgtgtcacagagttttgccattgaacttataccatcaagcattttttcgagtgaaatttcagtgcagcaac 217  Q
    || |||   |||||||||||||||||| |||||||||| ||||||| || |||||||| ||||| |||||||  || |||||||||||||||||| ||||    
T  1556745 aatcctcattctcgaccaacaatgaaacgtgtgtcacaaagttttgtcactgaacttacaccattaagcattcctttgagtgaaatttcagtgcaacaac 1556646  T
Q  218 tcatgagtcaaggactaaaaacattattt 246  Q
    | |||||| ||| ||| ||  ||||||||    
T  1556645 taatgagtgaagaactcaatgcattattt 1556617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 1550025 - 1549794
Alignment:
Q  18 atgtgaagtattagaccaacgtctcccacttccgaataatatgatggttttacttgacataattcgtgttgccgtagtagcatttgcgtgcttaaatctc 117  Q
    |||| ||||||||||||||||| | |||||||| ||||||   || ||| ||| |||||||||||  |||||||| ||||||||||| || |||||||||    
T  1550025 atgtcaagtattagaccaacgtattccacttccaaataatgaaatagttatacgtgacataattcaagttgccgtggtagcatttgcatgtttaaatctc 1549926  T
Q  118 aacccttcctctcgaccaacaatgaaatgtgtgtcacagagttttgccattgaacttataccatcaagcattttttcgagtgaaatttcagtgcagcaac 217  Q
    || |||  |||||||||||||||||||||||||||| | |||||||| | |||| | | ||||| ||  | | ||| ||||||||||||| |||||||||    
T  1549925 aatcctcgctctcgaccaacaatgaaatgtgtgtcagaaagttttgctactgaattgacaccattaaaaactcttttgagtgaaatttcattgcagcaac 1549826  T
Q  218 tcatgagtcaaggactaaaaacattatttcat 249  Q
    || ||||||||| ||| ||| | |||||||||    
T  1549825 tcttgagtcaagaactcaaagcgttatttcat 1549794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 1089373 - 1089601
Alignment:
Q  18 atgtgaagtattagaccaacgtctcccacttccgaataatatgatggttttacttgacataattcgtgttgccgtagtagcatttgcgtgcttaaatctc 117  Q
    |||| ||||||||||||||||||| |||||||| | |||    || | | | | ||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  1089373 atgtcaagtattagaccaacgtcttccacttccaagtaaagaaatagctatccatgacataattcatgttgccgtggtagcatttgcatgcttaaatctc 1089472  T
Q  118 aacccttcctctcgaccaacaatgaaatgtgtgtcacagagttttgccattgaacttataccatcaagcattttttcgagtgaaatttcagtgcagcaac 217  Q
    || |||   |||||||||||||||||| |||||||||| |||||||||| ||| || | ||||| ||| | |  || ||||||||||||| |||||||||    
T  1089473 aatcctcgttctcgaccaacaatgaaacgtgtgtcacaaagttttgccactgagctgacaccattaagaactcctttgagtgaaatttcaatgcagcaac 1089572  T
Q  218 tcatgagtcaaggactaaaaacattattt 246  Q
    || ||||||||| ||| ||| ||||||||    
T  1089573 tcttgagtcaagaactcaaagcattattt 1089601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 1605100 - 1605328
Alignment:
Q  18 atgtgaagtattagaccaacgtctcccacttccgaataat-atgatggttttacttgacataattcgtgttgccgtagtagcatttgcgtgcttaaatct 116  Q
    |||| ||||||||||||| ||||| |||||||| |||||  ||| | ||| ||| ||||||||||| ||||||||| || |||||||| ||||||||| |    
T  1605100 atgtcaagtattagaccagcgtcttccacttccaaataacgatg-tagttatacgtgacataattcatgttgccgtggttgcatttgcatgcttaaatat 1605198  T
Q  117 caacccttcctctcgaccaacaatgaaatgtgtgtcacagagttttgccattgaacttataccatcaagcattttttcgagtgaaatttcagtgcagcaa 216  Q
    ||| |||   |||||||||||||||||| |||||||||| ||||||| ||  || || | ||||| |||||||  || |||||||||||||||||| |||    
T  1605199 caatcctcgttctcgaccaacaatgaaacgtgtgtcacaaagttttgtcacggagctcacaccattaagcattcctttgagtgaaatttcagtgcaacaa 1605298  T
Q  217 ctcatgagtcaaggactaaaaacattattt 246  Q
    ||||||||||||| ||| |||  |||||||    
T  1605299 ctcatgagtcaagaactgaaaggattattt 1605328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 3853356 - 3853585
Alignment:
Q  20 gtgaagtattagaccaacgtctcccacttccgaataatatgatggttttacttgacataattcgtgttgccgtagtagcatttgcgtgcttaaatctcaa 119  Q
    |||||||| ||||| ||||||||| || ||| ||||||  |||||||| |||| |||| ||||  ||||| || ||||||||||| || ||||| || |     
T  3853356 gtgaagtactagacaaacgtctccaacgtccaaataatgagatggtttcacttcacattattcaggttgctgtcgtagcatttgcatgtttaaacctaag 3853455  T
Q  120 cccttcctctcgaccaacaatgaaatgtgtgtcacagagttttgccattgaacttataccatcaagcattttttcgagtgaaatttcagtgcagcaactc 219  Q
    ||  |||||||||||||||||||||||||||||||| |||||| ||| | |  ||||||||| |||||||  || ||||||| |||||| ||| |||| |    
T  3853456 cctgtcctctcgaccaacaatgaaatgtgtgtcacaaagtttttccactcagattataccattaagcattcctttgagtgaattttcagcgcatcaacac 3853555  T
Q  220 atgagtcaaggactaaaaacattatttcat 249  Q
    | |||||||| |||  ||||||||||||||    
T  3853556 acgagtcaagaactccaaacattatttcat 3853585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 1564101 - 1563873
Alignment:
Q  18 atgtgaagtattagaccaacgtctcccacttccgaataatatgatggttttacttgacataattcgtgttgccgtagtagcatttgcgtgcttaaatctc 117  Q
    |||| ||||||||||||||||||| | |||||| |||||    || ||| ||| ||||||||||| ||||||||| |||||||||||  | |||||||||    
T  1564101 atgtcaagtattagaccaacgtcttcgacttccaaataacgaaatagttatacgtgacataattcatgttgccgtggtagcatttgcaagtttaaatctc 1564002  T
Q  118 aacccttcctctcgaccaacaatgaaatgtgtgtcacagagttttgccattgaacttataccatcaagcattttttcgagtgaaatttcagtgcagcaac 217  Q
    || |||   ||||||||||||||||||||||| |||||  ||||||||| ||| || | ||| | |||| ||  || |||||||||||||||||||||||    
T  1564001 aatcctcgttctcgaccaacaatgaaatgtgtatcacaatgttttgccactgagctgacaccgttaagccttcctttgagtgaaatttcagtgcagcaac 1563902  T
Q  218 tcatgagtcaaggactaaaaacattattt 246  Q
    | |||||| ||| |||  || ||||||||    
T  1563901 taatgagtgaagaactcgaagcattattt 1563873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 1540795 - 1540572
Alignment:
Q  23 aagtattagaccaacgtctcccacttccgaataatatgatggttttacttgacataattcgtgttgccgtagtagcatttgcgtgcttaaatctcaaccc 122  Q
    ||||||||||||||||||| |||||||| ||||||   || ||| ||| ||||||||||| |||| || | ||||||||||| |||||||||  ||| ||    
T  1540795 aagtattagaccaacgtcttccacttccaaataatgacatagttatacgtgacataattcatgtttccctggtagcatttgcatgcttaaatggcaatcc 1540696  T
Q  123 ttcctctcgaccaacaatgaaatgtgtgtcacagagttttgccattgaacttataccatcaagcattttttcgagtgaaatttcagtgcagcaactcatg 222  Q
    |   |||||||||||||||||| |||||||||| ||||||| ||  || |||| ||| |  ||||||  || |||||||||||||||| ||||||| |||    
T  1540695 tcgttctcgaccaacaatgaaacgtgtgtcacaaagttttgtcaccgagcttacaccgtttagcattcctttgagtgaaatttcagtggagcaactaatg 1540596  T
Q  223 agtcaaggactaaaaacattattt 246  Q
    ||| ||| ||| ||| ||||||||    
T  1540595 agtgaagaactcaaagcattattt 1540572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 1597126 - 1597333
Alignment:
Q  18 atgtgaagtattagaccaacgtctcccacttccgaataatatgatggttttacttgacataattcgtgttgccgtagtagcatttgcgtgcttaaatctc 117  Q
    |||| ||||||||||||||||||| |||||||| ||||||  ||| ||| ||| | ||||||||| ||||||| |||| |||||||| ||||||| | |     
T  1597126 atgtcaagtattagaccaacgtcttccacttccaaataatgagatagttatacgtcacataattcatgttgccatagttgcatttgcatgcttaactatt 1597225  T
Q  118 aacccttcctctcgaccaacaatgaaatgtgtgtcacagagttttgccattgaacttataccatcaagcattttttcgagtgaaatttcagtgcagcaac 217  Q
     | |||   |||||||||||||||||| |||||||||| ||||||| ||  || |||| ||||| |||||||  || |||||||||||| ||||||||||    
T  1597226 gatcctcgttctcgaccaacaatgaaacgtgtgtcacaaagttttgtcaccgagcttacaccattaagcattcctttgagtgaaatttccgtgcagcaac 1597325  T
Q  218 tcatgagt 225  Q
    | ||||||    
T  1597326 taatgagt 1597333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 1106713 - 1106941
Alignment:
Q  18 atgtgaagtattagaccaacgtctcccacttccgaataatatgatggttttacttgacataattcgtgttgccgtagtagcatttgcgtgcttaaatctc 117  Q
    |||| ||||||||||||| ||||| |||||||| |||||     | ||| ||| ||||||||||| ||||||||| || |||||||| ||||||||| ||    
T  1106713 atgtcaagtattagaccagcgtcttccacttccaaataacgacgtagttatacgtgacataattcatgttgccgtggttgcatttgcatgcttaaatatc 1106812  T
Q  118 aacccttcctctcgaccaacaatgaaatgtgtgtcacagagttttgccattgaacttataccatcaagcattttttcgagtgaaatttcagtgcagcaac 217  Q
    || |||   |||||||||||||||||| |||| ||||| ||||||| ||  || || | ||||| |||||||  || |||||||||||||||||| ||||    
T  1106813 aatcctcgttctcgaccaacaatgaaacgtgtctcacaaagttttgtcacggagctcacaccattaagcattcctttgagtgaaatttcagtgcaacaac 1106912  T
Q  218 tcatgagtcaaggactaaaaacattattt 246  Q
    ||| | |||||| ||| |||  |||||||    
T  1106913 tcacgggtcaagaactgaaaggattattt 1106941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 18738680 - 18738456
Alignment:
Q  18 atgtgaagtattagaccaacgtctcccacttccgaataatatgatggttttacttgacataattcgtgttgccgtagtagcatttgcgtgcttaaatctc 117  Q
    |||| ||||||||||||| ||||| |||||||| ||||||   || ||| ||| ||||||||||| || |||||| ||||||||||| ||||||||| ||    
T  18738680 atgtcaagtattagaccaccgtcttccacttccaaataatgacatagttatacgtgacataattcatgctgccgtggtagcatttgcatgcttaaatgtc 18738581  T
Q  118 aacccttcctctcgaccaacaatgaaatgtgtgtcacagagttttgccattgaacttataccatcaagcattttttcgagtgaaatttcagtgcagcaac 217  Q
    || |||   |||||||||||||||||||||||||| || ||||||| ||  || |||  || || ||| |||  ||  ||||||||||||||||||||||    
T  18738580 aatcctcgttctcgaccaacaatgaaatgtgtgtcgcaaagttttgtcaccgagcttccacgattaagtattcctttcagtgaaatttcagtgcagcaac 18738481  T
Q  218 tcatgagtcaaggactaaaaacatt 242  Q
    | |||||| ||| ||| ||| ||||    
T  18738480 taatgagtgaagaacttaaagcatt 18738456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 18743644 - 18743420
Alignment:
Q  18 atgtgaagtattagaccaacgtctcccacttccgaataatatgatggttttacttgacataattcgtgttgccgtagtagcatttgcgtgcttaaatctc 117  Q
    |||| ||||||||||||| ||||| |||||||| ||||||   || ||| ||| ||||||||||| || |||||| ||||||||||| ||||||||| ||    
T  18743644 atgtcaagtattagaccaccgtcttccacttccaaataatgacatagttatacgtgacataattcatgctgccgtggtagcatttgcatgcttaaatgtc 18743545  T
Q  118 aacccttcctctcgaccaacaatgaaatgtgtgtcacagagttttgccattgaacttataccatcaagcattttttcgagtgaaatttcagtgcagcaac 217  Q
    || |||   |||||||||||||||||||||||||| || ||||||| ||  || |||  || || ||| |||  ||  ||||||||||||||||||||||    
T  18743544 aatcctcgttctcgaccaacaatgaaatgtgtgtcgcaaagttttgtcaccgagcttccacgattaagtattcctttcagtgaaatttcagtgcagcaac 18743445  T
Q  218 tcatgagtcaaggactaaaaacatt 242  Q
    | |||||| ||| ||| ||| ||||    
T  18743444 taatgagtgaagaacttaaagcatt 18743420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 18748611 - 18748387
Alignment:
Q  18 atgtgaagtattagaccaacgtctcccacttccgaataatatgatggttttacttgacataattcgtgttgccgtagtagcatttgcgtgcttaaatctc 117  Q
    |||| ||||||||||||| ||||| |||||||| ||||||   |||||| ||| | ||||||||| | ||||||| || || ||||| ||||||||| ||    
T  18748611 atgtcaagtattagaccagcgtcttccacttccaaataatgaaatggttatacgtaacataattcattttgccgttgttgcctttgcatgcttaaatgtc 18748512  T
Q  118 aacccttcctctcgaccaacaatgaaatgtgtgtcacagagttttgccattgaacttataccatcaagcattttttcgagtgaaatttcagtgcagcaac 217  Q
    || |||   |||||||||||||||||||||||||| || ||||||| ||  || |||  || || ||| |||  ||  ||||||||||||||||||||||    
T  18748511 aatcctcgttctcgaccaacaatgaaatgtgtgtcgcaaagttttgtcaccgagcttccacgattaagtattcctttcagtgaaatttcagtgcagcaac 18748412  T
Q  218 tcatgagtcaaggactaaaaacatt 242  Q
    | |||||| ||| ||| ||| ||||    
T  18748411 taatgagtgaagaactcaaagcatt 18748387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 163
Target Start/End: Complemental strand, 18722954 - 18722814
Alignment:
Q  23 aagtattagaccaacgtctcccacttccgaataatatgatggttttacttgacataattcgtgttgccgtagtagcatttgcgtgcttaaatctcaaccc 122  Q
    ||||||||||||| ||||| |||||||| ||||||   |||||| ||| | ||||||||| | ||||||| || || ||||| ||||||||| |||| ||    
T  18722954 aagtattagaccagcgtcttccacttccaaataatgaaatggttatacgtaacataattcattttgccgttgttgcctttgcatgcttaaatgtcaatcc 18722855  T
Q  123 ttcctctcgaccaacaatgaaatgtgtgtcacagagttttg 163  Q
    |   |||||||||||||||||||||||||| || |||||||    
T  18722854 tcgttctcgaccaacaatgaaatgtgtgtcgcaaagttttg 18722814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 5452 - 5228
Alignment:
Q  18 atgtgaagtattagaccaacgtctcccacttccgaataatatgatggttttacttgacataattcgtgttgccgtagtagcatttgcgtgcttaaatctc 117  Q
    |||| ||||||||||||| ||||| |||||||| ||||||   |||||| ||| | ||||||||| | ||||||| || || ||||| ||||||||| ||    
T  5452 atgtcaagtattagaccagcgtcttccacttccaaataatgaaatggttatacgtaacataattcattttgccgttgttgcctttgcatgcttaaatgtc 5353  T
Q  118 aacccttcctctcgaccaacaatgaaatgtgtgtcacagagttttgccattgaacttataccatcaagcattttttcgagtgaaatttcagtgcagcaac 217  Q
    || |||   |||||||||||||||||||||||||| || ||||||| ||  || |||  || || ||| |||  ||  ||||||||||||||||||||||    
T  5352 aatcctcgttctcgaccaacaatgaaatgtgtgtcgcaaagttttgtcaccgagcttccacgattaagtattcctttcagtgaaatttcagtgcagcaac 5253  T
Q  218 tcatgagtcaaggactaaaaacatt 242  Q
    | |||||| ||| ||| ||| ||||    
T  5252 taatgagtgaagaactcaaagcatt 5228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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