View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2534_low_2 (Length: 776)
Name: NF2534_low_2
Description: NF2534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2534_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 610; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 60 - 759
Target Start/End: Complemental strand, 45928708 - 45928004
Alignment:
| Q |
60 |
ttggggcagtgctgatgcataatagacagcatattgcatattacagctaggccttatccgaagtaaatttggtgagagaggtgtaagaggatcatcttag |
159 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45928708 |
ttggggcggtgctgatgcataatagacagcctattgcatattacagctaggccttatccgaagtaaatttggtgagagaggtgtaagaggatcatcttag |
45928609 |
T |
|
| Q |
160 |
aattaatggctaggctagtagtatccttctactagatttggttttttctttctattatggtgtaacttcctccatttgtattctaataaagttccatcta |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45928608 |
aattaatggctaggctagtagtatccttctactagatttggttttttctttctattatggtgtaacttcctccatttgtattctaataaagttccatcta |
45928509 |
T |
|
| Q |
260 |
gttgattcacattctcctctgatataattattggagtactgtaagctttgtattgacattgtaagcatttgtcataatctttggacatctcgagcctata |
359 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45928508 |
gttgattctcattctcctctgatataattattggagtactgtaagctttgtattgacattgtaagcatttgtcataatctttggacatctcgagcctata |
45928409 |
T |
|
| Q |
360 |
ttagtattttatttatttattttgcctttcnnnnnnnnnngttttaattttggtttgttaacttgagttggttgacaattattacatttcaactttgtat |
459 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45928408 |
ttagtattttatttatttattttgccttt-aaaaaaaaaagttttaattttggtttgttaacttgagttggttgacaattattacatttcaactttgtat |
45928310 |
T |
|
| Q |
460 |
atagctcagttttgataatgaatttcccaattttcttttactcttcc--------tcgacatccagttcaacatatttaacgaacattcttagctttgtg |
551 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45928309 |
atagctcagttttgataatgaatttcccaattttcttttactcttcctctgtatttcgacattcagttcaacatatttaacgaacattcttagctttgtg |
45928210 |
T |
|
| Q |
552 |
gtgatctaaattcctatatgcatcacagctatctgttgggacttttctgctgaagattattgtctccatttataaatcgcaaaacacctcaagcataatt |
651 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45928209 |
gtgatctaaattcctatatgcatcacagctatctgttgggacttttctgctgaagattattgtctccttttataaatcgcaaaacacctcaagcataatt |
45928110 |
T |
|
| Q |
652 |
ttgagccttattctagtttgtgtattaaaatgaaaagataaaataatatcatgctgggatttgtactattgaatatttgaatgaatgaattcacaagaca |
751 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45928109 |
ttgagccttattctagtt--tgtattaaaatgaaaagataaaataatatcatgctgggatttgtactattgaatatttgaatgaatgaattcacaagaca |
45928012 |
T |
|
| Q |
752 |
gtcatcat |
759 |
Q |
| |
|
|||||||| |
|
|
| T |
45928011 |
gtcatcat |
45928004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 45934251 - 45934199
Alignment:
| Q |
1 |
cacagaggctaaatgcagttgcatgataatgaactcacccaatgcagtccgaa |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
45934251 |
cacagaggctaaatgcagttgcatgataatgaaatcacccaaggcagtccgaa |
45934199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15816485 - 15816433
Alignment:
| Q |
1 |
cacagaggctaaatgcagttgcatgataatgaactcacccaatgcagtccgaa |
53 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
15816485 |
cacagaggctaattgcagttgcatgataatgaaatcacccaaggcagtccgaa |
15816433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 429
Target Start/End: Complemental strand, 48302727 - 48302698
Alignment:
| Q |
400 |
gttttaattttggtttgttaacttgagttg |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
48302727 |
gttttaattttggtttgttaacttgagttg |
48302698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University