View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2534_low_20 (Length: 250)

Name: NF2534_low_20
Description: NF2534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2534_low_20
NF2534_low_20
[»] chr8 (3 HSPs)
chr8 (11-129)||(12230801-12230919)
chr8 (162-250)||(12232060-12232148)
chr8 (76-112)||(33989032-33989068)
[»] chr1 (4 HSPs)
chr1 (9-148)||(50092768-50092907)
chr1 (14-107)||(6633097-6633190)
chr1 (11-124)||(39496196-39496309)
chr1 (11-133)||(22559747-22559869)
[»] chr2 (8 HSPs)
chr2 (9-118)||(17931143-17931252)
chr2 (11-142)||(27336586-27336721)
chr2 (11-103)||(34359268-34359360)
chr2 (39-143)||(32171419-32171523)
chr2 (75-122)||(44940350-44940397)
chr2 (76-107)||(79896-79927)
chr2 (67-122)||(20635168-20635223)
chr2 (79-124)||(14164517-14164562)
[»] chr3 (5 HSPs)
chr3 (9-142)||(14608379-14608512)
chr3 (9-116)||(26376157-26376264)
chr3 (75-128)||(19233185-19233238)
chr3 (79-122)||(16896548-16896591)
chr3 (75-122)||(30936632-30936679)
[»] chr5 (6 HSPs)
chr5 (10-117)||(20973154-20973261)
chr5 (65-116)||(2681851-2681902)
chr5 (10-137)||(27016959-27017086)
chr5 (16-106)||(38707632-38707722)
chr5 (10-122)||(842038-842150)
chr5 (68-124)||(13640680-13640736)
[»] chr7 (4 HSPs)
chr7 (11-137)||(8606393-8606519)
chr7 (75-122)||(34206450-34206497)
chr7 (75-122)||(4164159-4164206)
chr7 (28-103)||(45459505-45459580)
[»] chr4 (7 HSPs)
chr4 (16-122)||(19837196-19837302)
chr4 (11-107)||(21479709-21479805)
chr4 (75-122)||(38947850-38947897)
chr4 (65-122)||(53679086-53679143)
chr4 (70-122)||(19309560-19309612)
chr4 (67-122)||(17995640-17995695)
chr4 (76-124)||(18739480-18739528)
[»] chr6 (4 HSPs)
chr6 (75-122)||(16467539-16467586)
chr6 (65-116)||(26711342-26711393)
chr6 (67-108)||(5874596-5874637)
chr6 (78-140)||(19616779-19616841)
[»] scaffold0674 (1 HSPs)
scaffold0674 (67-122)||(2317-2372)
[»] scaffold0175 (1 HSPs)
scaffold0175 (10-59)||(19273-19322)


Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 12230801 - 12230919
Alignment:
Q  11 cacagatagaaacctttaaaggaacacttttatgccacaccgcttctgaaatgccgtcatggtcgtgcatctcctgccgcatgagcatttgatacacccc 110  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  12230801 cacagatagaaatctttaaaggaacacttttatgccacaccgcttctgaaatgtcgtcatggtcgtgcatctcttgccgcatgagcatttgatacacccc 12230900  T
Q  111 acgaactgtgtagctatct 129  Q
    |||||||||||||||||||    
T  12230901 acgaactgtgtagctatct 12230919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 12232060 - 12232148
Alignment:
Q  162 taaattatcaactgagctaagctcacgggattaatgataattgatttttattaaacaaataaattacatgactctcaataattttacct 250  Q
    ||||||||||||||   ||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||    
T  12232060 taaattatcaactggattaagctcacgggattaatgatgaatgatctttattaaacaaataaattacatgactctcaataattttacct 12232148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 33989068 - 33989032
Alignment:
Q  76 tgcatctcctgccgcatgagcatttgatacaccccac 112  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  33989068 tgcatctcctgcctcatgagcatttgatacacaccac 33989032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 50092768 - 50092907
Alignment:
Q  9 agcacagatagaaacctttaaaggaacacttttatgccacaccgcttctgaaatgccgtcatggtcgtgcatctcctgccgcatgagcatttgatacacc 108  Q
    |||| ||||||| ||||| | ||||||| |||||||||||||||||||||||| | | |||||||| || |||||||||| ||||||||||||||||||     
T  50092768 agcatagatagacaccttcagaggaacatttttatgccacaccgcttctgaaacggcatcatggtcatgaatctcctgcctcatgagcatttgatacaca 50092867  T
Q  109 ccacgaactgtgtagctatctcctgcattcgggcgtcaaa 148  Q
    ||||||| ||| |||| |||||||||||||||||| ||||    
T  50092868 ccacgaattgtatagccatctcctgcattcgggcgccaaa 50092907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 6633097 - 6633190
Alignment:
Q  14 agatagaaacctttaaaggaacacttttatgccacaccgcttctgaaatgccgtcatggtcgtgcatctcctgccgcatgagcatttgatacac 107  Q
    |||||||||  |||||||||| |||||||||||||||||| ||||| ||| | |||||  ||||||||| ||||| | ||||||||||||||||    
T  6633097 agatagaaatatttaaaggaatacttttatgccacaccgcgtctgacatgtcatcatgaacgtgcatcttctgcctcgtgagcatttgatacac 6633190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 39496196 - 39496309
Alignment:
Q  11 cacagatagaaacctttaaaggaacacttttatgccacaccgcttctgaaatgccgtcatggtcgtgcatctcctgccgcatgagcatttgatacacccc 110  Q
    ||||||||||||||||||  |  |||  ||||||||||||||| || || | | | |||||||| |||||||||||| ||||||||||||||||||| ||    
T  39496196 cacagatagaaacctttagcgagacatgtttatgccacaccgcatcagagacgacatcatggtcatgcatctcctgctgcatgagcatttgatacacacc 39496295  T
Q  111 acgaactgtgtagc 124  Q
    || |||||| ||||    
T  39496296 acaaactgtatagc 39496309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 133
Target Start/End: Complemental strand, 22559869 - 22559747
Alignment:
Q  11 cacagatagaaacctttaaaggaacacttttatgccacaccgcttctgaaatgccgtcatggtcgtgcatctcctgccgcatgagcatttgatacacccc 110  Q
    |||| ||||| |||||||||| ||||||||||||||||||| | ||  | ||  | ||||| |||||||||||||||| |||||||| |||||| || ||    
T  22559869 cacatatagagacctttaaagaaacacttttatgccacaccacgtcgaacatatcatcatgatcgtgcatctcctgcctcatgagcaattgatagacacc 22559770  T
Q  111 acgaactgtgtagctatctcctg 133  Q
    || ||| || |||| ||||||||    
T  22559769 actaacagtatagccatctcctg 22559747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 17931143 - 17931252
Alignment:
Q  9 agcacagatagaaacctttaaaggaacacttttatgccacaccgcttctgaaatgccgtcatggtcgtgcatctcctgccgcatgagcatttgatacacc 108  Q
    |||||| ||||| | |||||| || ||| |||||||||||||||| ||||||| | | |||||||| ||||||||||||||||||||||||||||||||     
T  17931143 agcacaaatagagatctttaacgggacatttttatgccacaccgcatctgaaacgacatcatggtcatgcatctcctgccgcatgagcatttgatacaca 17931242  T
Q  109 ccacgaactg 118  Q
    ||||||||||    
T  17931243 ccacgaactg 17931252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 27336721 - 27336586
Alignment:
Q  11 cacagatagaaacctttaaaggaacacttttatgccacaccgcttctgaaatgccgtcatggtcg----tgcatctcctgccgcatgagcatttgataca 106  Q
    ||||||||||||||||||| |||||| |||||||||||| ||| ||||||| | | ||||| | |    | |||||||||| ||||||||||||||||||    
T  27336721 cacagatagaaacctttaacggaacatttttatgccacatcgcatctgaaacggcatcatgattgattgtacatctcctgctgcatgagcatttgataca 27336622  T
Q  107 ccccacgaactgtgtagctatctcctgcattcgggc 142  Q
    | ||||||||||| |||| ||| | || ||||||||    
T  27336621 caccacgaactgtatagccatcacttgtattcgggc 27336586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 34359268 - 34359360
Alignment:
Q  11 cacagatagaaacctttaaaggaacacttttatgccacaccgcttctgaaatgccgtcatggtcgtgcatctcctgccgcatgagcatttgat 103  Q
    |||||||| |||||||| ||  |||| |||||||| |||||||||| |||||| | ||| |||||||||||||||  ||||||||||||||||    
T  34359268 cacagataaaaaccttttaaaaaacaattttatgctacaccgcttccgaaatgtcatcacggtcgtgcatctcctatcgcatgagcatttgat 34359360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 32171419 - 32171523
Alignment:
Q  39 tttatgccacaccgcttctgaaatgccgtcatggtcgtgcatctcctgccgcatgagcatttgatacaccccacgaactgtgtagctatctcctgcattc 138  Q
    ||||||||||||| | ||||||| | | ||||| |||||||||||||||  |||||||||||||||||| |||   |||||||||| ||| |||| |||     
T  32171419 tttatgccacaccacatctgaaacgacatcatgatcgtgcatctcctgctacatgagcatttgatacacaccattgactgtgtagccatcacctgaattt 32171518  T
Q  139 gggcg 143  Q
    |||||    
T  32171519 gggcg 32171523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 44940350 - 44940397
Alignment:
Q  75 gtgcatctcctgccgcatgagcatttgatacaccccacgaactgtgta 122  Q
    ||||||||||||||||||||||||||||||||  |||||||| |||||    
T  44940350 gtgcatctcctgccgcatgagcatttgatacataccacgaacagtgta 44940397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 79896 - 79927
Alignment:
Q  76 tgcatctcctgccgcatgagcatttgatacac 107  Q
    ||||||||||||||||||||||||||||||||    
T  79896 tgcatctcctgccgcatgagcatttgatacac 79927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 20635168 - 20635223
Alignment:
Q  67 tcatggtcgtgcatctcctgccgcatgagcatttgatacaccccacgaactgtgta 122  Q
    ||||| ||||| ||||||| || ||| |||||||||||||| ||||||||||||||    
T  20635168 tcatgatcgtgtatctccttcctcataagcatttgatacacaccacgaactgtgta 20635223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 14164517 - 14164562
Alignment:
Q  79 atctcctgccgcatgagcatttgatacaccccacgaactgtgtagc 124  Q
    |||||||||| ||| ||||| |||||||| ||||||||||||||||    
T  14164517 atctcctgcctcataagcatatgatacacaccacgaactgtgtagc 14164562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 14608512 - 14608379
Alignment:
Q  9 agcacagatagaaacctttaaaggaacacttttatgccacaccgcttctgaaatgccgtcatggtcgtgcatctcctgccgcatgagcatttgatacacc 108  Q
    |||||| ||| | |||| || ||||||| | |||||||||||||||||  ||| | | ||||||||||| || ||||||| ||||||||||||||||||     
T  14608512 agcacatataaacacctatagaggaacattattatgccacaccgcttcctaaacgacatcatggtcgtgaatgtcctgcctcatgagcatttgatacaca 14608413  T
Q  109 ccacgaactgtgtagctatctcctgcattcgggc 142  Q
    ||||||||||| |||| ||||  |||||||||||    
T  14608412 ccacgaactgtatagccatcttatgcattcgggc 14608379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 26376264 - 26376157
Alignment:
Q  9 agcacagatagaaacctttaaaggaacacttttatgccacaccgcttctgaaatgccgtcatggtcgtgcatctcctgccgcatgagcatttgatacacc 108  Q
    |||||| ||||| ||||| |||||||| ||||||||||||||| | || || | | | |||||  | ||||||||||||| ||||||||||||||||||     
T  26376264 agcacaaatagagaccttcaaaggaacgcttttatgccacaccacgtccgagaagtcatcatgaacatgcatctcctgcctcatgagcatttgatacact 26376165  T
Q  109 ccacgaac 116  Q
    ||||||||    
T  26376164 ccacgaac 26376157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 19233185 - 19233238
Alignment:
Q  75 gtgcatctcctgccgcatgagcatttgatacaccccacgaactgtgtagctatc 128  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||    
T  19233185 gtgcatctcctgccgcatgagcatttgatacacaccacgaacagtgtacctatc 19233238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 16896591 - 16896548
Alignment:
Q  79 atctcctgccgcatgagcatttgatacaccccacgaactgtgta 122  Q
    ||||||||||||||||||||||||||||| |||||||| |||||    
T  16896591 atctcctgccgcatgagcatttgatacacaccacgaacagtgta 16896548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 30936679 - 30936632
Alignment:
Q  75 gtgcatctcctgccgcatgagcatttgatacaccccacgaactgtgta 122  Q
    ||||||||| ||||||||||||||||||||||| |||||||| |||||    
T  30936679 gtgcatctcttgccgcatgagcatttgatacacaccacgaacagtgta 30936632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 20973261 - 20973154
Alignment:
Q  10 gcacagatagaaacctttaaaggaacacttttatgccacaccgcttctgaaatgccgtcatggtcgtgcatctcctgccgcatgagcatttgatacaccc 109  Q
    ||||| ||||| |||||||| |||||| ||||||| |||||||| ||||||| | | |||||||| ||||||| || || |||||||||||||| ||| |    
T  20973261 gcacaaatagagacctttaacggaacatttttatgtcacaccgcatctgaaacgacatcatggtcatgcatcttctaccacatgagcatttgatgcacac 20973162  T
Q  110 cacgaact 117  Q
    ||||||||    
T  20973161 cacgaact 20973154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 2681851 - 2681902
Alignment:
Q  65 cgtcatggtcgtgcatctcctgccgcatgagcatttgatacaccccacgaac 116  Q
    |||||||||  |||||||||||||||||||||||||||||||| ||||||||    
T  2681851 cgtcatggttatgcatctcctgccgcatgagcatttgatacacaccacgaac 2681902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 27017086 - 27016959
Alignment:
Q  10 gcacagatagaaacctttaaaggaacacttttatgccacaccgcttctgaaatgccgtcatggtcgtgcatctcctgccgcatgagcatttgatacaccc 109  Q
    ||||| ||||| |||||||||||||||||||| ||||||||||| ||  | ||  | ||||| ||| | |||||||||| ||| | |||||||||||| |    
T  27017086 gcacaaatagagacctttaaaggaacacttttgtgccacaccgcatccaagatatcatcatgatcgcgtatctcctgcctcataaacatttgatacacgc 27016987  T
Q  110 cacgaactgtgtagctatctcctgcatt 137  Q
    | || || || |||| |||| |||||||    
T  27016986 ctcgcacagtatagccatcttctgcatt 27016959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 38707632 - 38707722
Alignment:
Q  16 atagaaacctttaaaggaacacttttatgccacaccgcttctgaaatgccgtcatggtcgtgcatctcctgccgcatgagcatttgataca 106  Q
    |||||||||||||||||||||||| | ||||||||||| ||  | ||| | | ||| ||||||| ||| |||| ||| |||||||||||||    
T  38707632 atagaaacctttaaaggaacacttctgtgccacaccgcatccaatatgtcatgatgatcgtgcaactcttgcctcataagcatttgataca 38707722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 842038 - 842150
Alignment:
Q  10 gcacagatagaaacctttaaaggaacacttttatgccacaccgcttctgaaatgccgtcatggtcgtgcatctcctgccgcatgagcatttgatacaccc 109  Q
    ||||| |||||||| || |||||| |||| ||||||||    || || |||| | |||| ||||  ||||||||||| |||||||||||||||||||| |    
T  842038 gcacaaatagaaactttcaaaggagcactcttatgccaaggagcatccgaaacgacgtcgtggttatgcatctcctgtcgcatgagcatttgatacacac 842137  T
Q  110 cacgaactgtgta 122  Q
     |||||| |||||    
T  842138 aacgaacggtgta 842150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 13640736 - 13640680
Alignment:
Q  68 catggtcgtgcatctcctgccgcatgagcatttgatacaccccacgaactgtgtagc 124  Q
    ||||||| ||||||||||||| |||||| ||||||||||| ||||| || |||||||    
T  13640736 catggtcatgcatctcctgcctcatgagaatttgatacacaccacggacggtgtagc 13640680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 8606519 - 8606393
Alignment:
Q  11 cacagatagaaacctttaaaggaacacttttatgccacaccgcttctgaaatgccgtcatggtcgtgcatctcctgccgcatgagcatttgatacacccc 110  Q
    |||||||||| ||||||||||||||||| ||||||||||| || ||  | ||| | || ||  | | |||||||| || |||||||||||||||||| ||    
T  8606519 cacagatagagacctttaaaggaacactattatgccacactgcatccaacatgtcatcgtgaacattcatctcctacctcatgagcatttgatacacacc 8606420  T
Q  111 acgaactgtgtagctatctcctgcatt 137  Q
    | ||||  | |||||||||||||||||    
T  8606419 atgaacattatagctatctcctgcatt 8606393  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 34206450 - 34206497
Alignment:
Q  75 gtgcatctcctgccgcatgagcatttgatacaccccacgaactgtgta 122  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||    
T  34206450 gtgcatctcctgccgcatgagcatttgatacacaccacgaacagtgta 34206497  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 4164159 - 4164206
Alignment:
Q  75 gtgcatctcctgccgcatgagcatttgatacaccccacgaactgtgta 122  Q
    |||| |||||||||||||||||||||||||||| |||||||| |||||    
T  4164159 gtgcctctcctgccgcatgagcatttgatacacaccacgaacagtgta 4164206  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 45459505 - 45459580
Alignment:
Q  28 aaaggaacacttttatgccacaccgcttctgaaatgccgtcatggtcgtgcatctcctgccgcatgagcatttgat 103  Q
    ||||||||||| ||||||||    || || |||||| |||  |||| |||||||||||||||||||||||||||||    
T  45459505 aaaggaacactcttatgccaaggagcatccgaaatgacgttgtggttgtgcatctcctgccgcatgagcatttgat 45459580  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 19837196 - 19837302
Alignment:
Q  16 atagaaacctttaaaggaacacttttatgccacaccgcttctgaaatgccgtcatggtcgtgcatctcctgccgcatgagcatttgatacaccccacgaa 115  Q
    |||||||| || ||||||||||| ||||||||    || || |||| | |||| |||| ||||| ||||||||||||||||||||||||||| |||||||    
T  19837196 atagaaactttcaaaggaacactcttatgccaaggagcatccgaaacgacgtcgtggttgtgcacctcctgccgcatgagcatttgatacacaccacgaa 19837295  T
Q  116 ctgtgta 122  Q
    | |||||    
T  19837296 cggtgta 19837302  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 21479709 - 21479805
Alignment:
Q  11 cacagatagaaacctttaaaggaacacttttatgccacaccgcttctgaaatgccgtcatggtcgtgcatctcctgccgcatgagcatttgatacac 107  Q
    |||| ||||| ||||| |||||||||||||||||||||||||| || || | | | || ||   |||||||||||||| ||||||||||||||||||    
T  21479709 cacaaatagagaccttcaaaggaacacttttatgccacaccgcgtccgagaagtcatcgtgaaagtgcatctcctgcctcatgagcatttgatacac 21479805  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 38947897 - 38947850
Alignment:
Q  75 gtgcatctcctgccgcatgagcatttgatacaccccacgaactgtgta 122  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||    
T  38947897 gtgcatctcctgccgcatgagcatttgatacacaccacgaacagtgta 38947850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 53679143 - 53679086
Alignment:
Q  65 cgtcatggtcgtgcatctcctgccgcatgagcatttgatacaccccacgaactgtgta 122  Q
    |||||| || ||||||||||||||||| ||||||||||||||| |||||||| |||||    
T  53679143 cgtcatagttgtgcatctcctgccgcaagagcatttgatacacaccacgaacagtgta 53679086  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 19309612 - 19309560
Alignment:
Q  70 tggtcgtgcatctcctgccgcatgagcatttgatacaccccacgaactgtgta 122  Q
    |||| ||||||||| ||||||||||||||||||||||| |||| ||| |||||    
T  19309612 tggttgtgcatctcttgccgcatgagcatttgatacacaccactaacagtgta 19309560  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 17995640 - 17995695
Alignment:
Q  67 tcatggtcgtgcatctcctgccgcatgagcatttgatacaccccacgaactgtgta 122  Q
    ||||| ||||| ||||||| || ||| |||||||||||||| ||||||||||||||    
T  17995640 tcatgatcgtgtatctccttcctcataagcatttgatacacaccacgaactgtgta 17995695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 18739528 - 18739480
Alignment:
Q  76 tgcatctcctgccgcatgagcatttgatacaccccacgaactgtgtagc 124  Q
    ||||||||||||| ||| |||||||||||||| ||||| ||||| ||||    
T  18739528 tgcatctcctgcctcattagcatttgatacacaccacggactgtatagc 18739480  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 16467539 - 16467586
Alignment:
Q  75 gtgcatctcctgccgcatgagcatttgatacaccccacgaactgtgta 122  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||    
T  16467539 gtgcatctcctgccgcatgagcatttgatacacaccacgaacagtgta 16467586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 26711342 - 26711393
Alignment:
Q  65 cgtcatggtcgtgcatctcctgccgcatgagcatttgatacaccccacgaac 116  Q
    |||||| || ||||||||||| ||||||||||||||||||||| ||||||||    
T  26711342 cgtcatagttgtgcatctcctaccgcatgagcatttgatacacaccacgaac 26711393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 5874637 - 5874596
Alignment:
Q  67 tcatggtcgtgcatctcctgccgcatgagcatttgatacacc 108  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  5874637 tcatggttgtgcatctcctgccgcatgagcatttgacacacc 5874596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 19616841 - 19616779
Alignment:
Q  78 catctcctgccgcatgagcatttgatacaccccacgaactgtgtagctatctcctgcattcgg 140  Q
    ||||||||||| ||||||||||||||||||  ||||||| || || | |||||| ||||||||    
T  19616841 catctcctgcctcatgagcatttgatacacagcacgaacagtataaccatctccagcattcgg 19616779  T

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Target: scaffold0674 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 2372 - 2317
Alignment:
Q  67 tcatggtcgtgcatctcctgccgcatgagcatttgatacaccccacgaactgtgta 122  Q
    ||||| ||||| ||||||| || ||| |||||||||||||| ||||||||||||||    
T  2372 tcatgatcgtgtatctccttcctcataagcatttgatacacaccacgaactgtgta 2317  T

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Target: scaffold0175 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 19322 - 19273
Alignment:
Q  10 gcacagatagaaacctttaaaggaacacttttatgccacaccgcttctga 59  Q
    ||||||||||||||||| ||| ||||||||||||| ||||| || |||||    
T  19322 gcacagatagaaaccttcaaatgaacacttttatgacacactgcgtctga 19273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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