View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2534_low_21 (Length: 248)

Name: NF2534_low_21
Description: NF2534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2534_low_21
NF2534_low_21
[»] chr5 (4 HSPs)
chr5 (3-238)||(74990-75217)
chr5 (1-46)||(37206088-37206133)
chr5 (1-49)||(38976295-38976343)
chr5 (1-49)||(24477292-24477340)
[»] chr4 (7 HSPs)
chr4 (94-238)||(41361371-41361516)
chr4 (1-56)||(41361267-41361322)
chr4 (1-49)||(3415262-3415310)
chr4 (1-49)||(43286311-43286359)
chr4 (1-49)||(52464145-52464193)
chr4 (1-49)||(19240779-19240827)
chr4 (1-49)||(32767591-32767639)
[»] chr3 (3 HSPs)
chr3 (110-238)||(20510674-20510803)
chr3 (1-49)||(2869014-2869062)
chr3 (1-49)||(42854342-42854390)
[»] chr7 (4 HSPs)
chr7 (110-238)||(35710008-35710137)
chr7 (1-49)||(35709902-35709950)
chr7 (5-49)||(2621489-2621533)
chr7 (1-49)||(7505246-7505294)
[»] chr2 (2 HSPs)
chr2 (1-47)||(38838096-38838142)
chr2 (1-49)||(15614205-15614253)
[»] chr8 (2 HSPs)
chr8 (1-49)||(29894513-29894561)
chr8 (1-49)||(42739411-42739459)
[»] chr6 (5 HSPs)
chr6 (1-49)||(20139223-20139271)
chr6 (1-49)||(22193598-22193646)
chr6 (1-49)||(31472538-31472586)
chr6 (1-49)||(27966803-27966851)
chr6 (1-49)||(31655580-31655628)
[»] chr1 (2 HSPs)
chr1 (1-49)||(30533402-30533450)
chr1 (1-49)||(31489552-31489600)


Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 74990 - 75217
Alignment:
Q  3 ccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcctgtatttcatcccggcccgaaaaaagcccgtatgggctacggccctacgggta 102  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||        |||||    
T  74990 ccgaaagcccgaataaaacgtagggcttgggcctaaaaattgcagcccgtatttcatcccggcccgaaaaaagcccgtatgggctac--------gggta 75081  T
Q  103 gcgcggcagcccgcgtaatggaaattacagctttcttaccgtcaaaggagaggaaagaatgttcatggctttcaattgtacatgactttcagaccatact 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75082 gcgcggcagcccgcgtaatggaatttacagctttcttaccgtcaaaggagaggaaagaatgttcatggctttcaattgtacatgactttcagaccatact 75181  T
Q  203 tttattatattatgtatgcggtacctttatgttcat 238  Q
    |||||||||| |||||||||||||||||||||||||    
T  75182 tttattatatcatgtatgcggtacctttatgttcat 75217  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37206133 - 37206088
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgca 46  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||    
T  37206133 gcccgaaagcccgaataaaacgtagggcttgggcctaaaaattgca 37206088  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 38976343 - 38976295
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    |||||||||||||||||||||||||| |||| |||||| ||||||||||    
T  38976343 gcccgaaagcccgaataaaacgtagggcttgggcctaataattgcagcc 38976295  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24477292 - 24477340
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    |||||||||||||||||||| ||||| |||||||| || ||||| ||||    
T  24477292 gcccgaaagcccgaataaaatgtagggcttgagccgaataattggagcc 24477340  T

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Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 94 - 238
Target Start/End: Original strand, 41361371 - 41361516
Alignment:
Q  94 ctacgggtagcgcggcagcccgcgtaatggaaattacagctttcttaccgtcaaa-ggagaggaaagaatgttcatggctttcaattgtacatgactttc 192  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  41361371 ctacgggtagcctggcagcccgcgtaatggaaattacagctttcttaccgtcaaaaggagaggaaagaatgttcatggctttcaattatacatgactttc 41361470  T
Q  193 agaccatacttttattatattatgtatgcggtacctttatgttcat 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  41361471 agaccatacttttattatattatgtatgcggtacctttatgttcat 41361516  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 41361267 - 41361322
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcctgtattt 56  Q
    |||||||||||||||||||||| | | |||| ||||||||||||||||| ||||||    
T  41361267 gcccgaaagcccgaataaaacgcatggcttgggcctaaaaattgcagcccgtattt 41361322  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3415310 - 3415262
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    |||||||||||||||||||||||||| |||| |||||| ||||| ||||    
T  3415310 gcccgaaagcccgaataaaacgtagggcttgggcctaataattggagcc 3415262  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43286359 - 43286311
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    |||||| ||||||||||||||||||| |||| |||||| ||||||||||    
T  43286359 gcccgagagcccgaataaaacgtagggcttgggcctaataattgcagcc 43286311  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 52464193 - 52464145
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    |||||||||||||||||||||||||| |||| |||||| |||| |||||    
T  52464193 gcccgaaagcccgaataaaacgtagggcttgggcctaataattacagcc 52464145  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19240779 - 19240827
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    |||||||||||||||||||| |||||  ||| |||||| ||||||||||    
T  19240779 gcccgaaagcccgaataaaatgtagggtttgggcctaataattgcagcc 19240827  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32767591 - 32767639
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    ||||||||||||||||||||  |||| |||| |||||| ||||||||||    
T  32767591 gcccgaaagcccgaataaaatatagggcttgggcctaataattgcagcc 32767639  T

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Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 110 - 238
Target Start/End: Original strand, 20510674 - 20510803
Alignment:
Q  110 agcccgcgtaatggaaattacagctttcttaccgtcaaa-ggagaggaaagaatgttcatggctttcaattgtacatgactttcagaccatacttttatt 208  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20510674 agcccgcgtaatggaaattacagctttcttaccgtcaaaaggagaggaaagaatgttcatggctttcaattgtacatgactttcagaccagacttttatt 20510773  T
Q  209 atattatgtatgcggtacctttatgttcat 238  Q
    ||||||||||||||||||||||||||||||    
T  20510774 atattatgtatgcggtacctttatgttcat 20510803  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2869014 - 2869062
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    |||||||||||||||||||||||||  |||| |||| ||||||||||||    
T  2869014 gcccgaaagcccgaataaaacgtagagcttgggcctgaaaattgcagcc 2869062  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42854390 - 42854342
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    ||||||||||||| |||||||||||| |||| |||||| ||||| ||||    
T  42854390 gcccgaaagcccgcataaaacgtagggcttgggcctaataattggagcc 42854342  T

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Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 110 - 238
Target Start/End: Original strand, 35710008 - 35710137
Alignment:
Q  110 agcccgcgtaatggaaattacagctttcttaccgtcaaa-ggagaggaaagaatgttcatggctttcaattgtacatgactttcagaccatacttttatt 208  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  35710008 agcccgcataatggaaattactgctttcttaccgtcaaaaggagaggaaagaatgttcatggctttcaattgtacatgactttcataccagacttttatt 35710107  T
Q  209 atattatgtatgcggtacctttatgttcat 238  Q
    ||||||||||||||||||||||||||||||    
T  35710108 atattatgtatgcggtacctttatgttcat 35710137  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 35709902 - 35709950
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    |||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  35709902 gcccgaaagcccgaataaaacgcagggcttgggcctaaaaattgcagcc 35709950  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 2621533 - 2621489
Alignment:
Q  5 gaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||    
T  2621533 gaaagcccgaataaaacgtagggtttgagcctaataattgcagcc 2621489  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7505246 - 7505294
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    ||||||||||| |||||||| ||||| |||| |||||| ||||||||||    
T  7505246 gcccgaaagcctgaataaaatgtagggcttgggcctaataattgcagcc 7505294  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 38838142 - 38838096
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcag 47  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||    
T  38838142 gcccgaaagcccgaataaaacgtagggcttgggcctaaaaattgcag 38838096  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15614253 - 15614205
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    ||||||||||||||||||||  |||| |||| |||||| ||||||||||    
T  15614253 gcccgaaagcccgaataaaatatagggcttgggcctaataattgcagcc 15614205  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29894561 - 29894513
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    |||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  29894561 gcccaaaagcccgaataaaacgtaggacttggacctaaaaattgcagcc 29894513  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42739459 - 42739411
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    |||||||||||||||||||||||||| |||| |||||| ||||||||||    
T  42739459 gcccgaaagcccgaataaaacgtagggcttgggcctaataattgcagcc 42739411  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20139223 - 20139271
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    |||||||||||||||||||||||||| |||| |||||| ||||||||||    
T  20139223 gcccgaaagcccgaataaaacgtagggcttgggcctaataattgcagcc 20139271  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22193646 - 22193598
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    |||||||||||||||||||||||||| |||| |||||| ||||||||||    
T  22193646 gcccgaaagcccgaataaaacgtagggcttgggcctaataattgcagcc 22193598  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31472586 - 31472538
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    |||||||||||||||||||||||||| |||| |||||| ||||||||||    
T  31472586 gcccgaaagcccgaataaaacgtagggcttgggcctaataattgcagcc 31472538  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27966851 - 27966803
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    |||||||||||||| ||||| ||||| |||| |||||| ||||||||||    
T  27966851 gcccgaaagcccgagtaaaatgtagggcttgggcctaataattgcagcc 27966803  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31655628 - 31655580
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    ||||||||||||||||||||| ||||  ||| ||||||||||| |||||    
T  31655628 gcccgaaagcccgaataaaacatagggtttgggcctaaaaattacagcc 31655580  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30533402 - 30533450
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    |||||||||||||||||||| ||||| |||| ||||||||||| |||||    
T  30533402 gcccgaaagcccgaataaaatgtaggtcttgggcctaaaaattacagcc 30533450  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31489600 - 31489552
Alignment:
Q  1 gcccgaaagcccgaataaaacgtaggacttgagcctaaaaattgcagcc 49  Q
    ||||||||||||||||||||| |||| |||| ||||||||||| |||||    
T  31489600 gcccgaaagcccgaataaaacatagggcttgggcctaaaaattacagcc 31489552  T

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