View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2534_low_24 (Length: 237)
Name: NF2534_low_24
Description: NF2534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2534_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 12232372 - 12232578
Alignment:
| Q |
8 |
agcacaagtttgaacgtggacatacatgtttaattgtttatgtctcacatataaaatacaacttatttctacannnnnnnatgtcaaaattcttagccat |
107 |
Q |
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| T |
12232372 |
agcacaagtttgaacgtggacatacatgttta--------tgtctcacatataaaatacaacttatttctacattttttcatgtcaaaattcttagccat |
12232463 |
T |
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| Q |
108 |
ttgcaacacctattgttgttatttgaactaacacgagttgctacttatttaattactacatgaatgagaggcaacgatgcatgttttggccacgtatcga |
207 |
Q |
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| T |
12232464 |
ttgcaacacctattgttgttatttgaaccaacacgagttgctacttatttaattattacatgaatgagaggcaacaatgcatcttttggccacgtattga |
12232563 |
T |
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| Q |
208 |
cgtggaattgatctt |
222 |
Q |
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| T |
12232564 |
cgtgagattgatctt |
12232578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 12227319 - 12227514
Alignment:
| Q |
8 |
agcacaagtttgaacgtggacatacatgtttaattgtttatgtctcacatataaaatacaacttatttctacannnnnnnatgtcaaaattcttagccat |
107 |
Q |
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| T |
12227319 |
agcacaagtttgaacgtggacatgcatgtttaag-------gtctcacatataaaataaaacttatttccacatttttt-atgtcaaaattcttagccat |
12227410 |
T |
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| Q |
108 |
ttgcaacacctattgttgttatttgaactaacacgagttgctacttatttaattactacatgaatgagaggcaacgatgcatgttttggccacgtatcga |
207 |
Q |
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| T |
12227411 |
ttgcaacacctattgttgttatttgagccaacacgagttgctacttatttaattattatatggatgagaggcaacaatgcaagttttggccacgtatcaa |
12227510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 12241377 - 12241435
Alignment:
| Q |
104 |
ccatttgcaacacctattgttgttatttgaactaacacgagttgctacttatttaatta |
162 |
Q |
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| T |
12241377 |
ccatttgcaacacctattgttattatttgaatcaacacgagttagtatttatttaatta |
12241435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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