View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2534_low_25 (Length: 225)
Name: NF2534_low_25
Description: NF2534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2534_low_25 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 35200678 - 35200906
Alignment:
| Q |
1 |
tgatctctcttcctcactctctgacacactcacactccattaacggtttattgtcttttcattnnnnnnn--caagaacaaaagtgatatctttggtcaa |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
35200678 |
tgatctctcttcctcactctctgacacactcacactccattaacggtttattgtcttttgattaaaaaaaaacaagaacaaaagtgatatctttggtcaa |
35200777 |
T |
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| Q |
99 |
catggatgagagaagaaaattatggagtagaacaaag--tcttttaattacaaatgcaaagtgtgacctcgttgtgtaattcaattgagtcttcttgaga |
196 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35200778 |
catggatgagagaagaaaattatggagtagaacaaagagtcttttaattacaaatgcaaagtgtgacctcgttgtgtaattcaattgagtcttcttgaga |
35200877 |
T |
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| Q |
197 |
tgtacagagccacatggtggttttttgtc |
225 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
35200878 |
tgtaaagagccacatggtggttttttgtc |
35200906 |
T |
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