View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2534_low_5 (Length: 512)
Name: NF2534_low_5
Description: NF2534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2534_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 493
Target Start/End: Complemental strand, 21115959 - 21115477
Alignment:
| Q |
11 |
catcatcacagaaccaggcatcaataaacaagaatctaagagtttgtttatgtctgcttgaatcaacctcctcattgattgtaacgataatctttctccc |
110 |
Q |
| |
|
|||| |||||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| |||||||| |
|
|
| T |
21115959 |
catcttcacagaaccaggcgtgaacaaacaagaatcgaagagtttgtttatgtctgcttgaatcaagctcctcattgactgtaatgataatttttctccc |
21115860 |
T |
|
| Q |
111 |
gcacctagtccaaatgcatacctcatcaaatcttctgttggtatgtgatagtcttctggaaaaagagtacacatcattaagagcaattgtgcgtgctgcc |
210 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | |||| || ||||| |
|
|
| T |
21115859 |
atacctagtccaaatgcaaacctcatcaaatcttctgttgggatgtgatagtcttctggaaaaagagtacaaatcattaagagtagctgtgtgtactgcc |
21115760 |
T |
|
| Q |
211 |
tttgcaaataatcatagcttaatttaaggcaacttaaagtagtccttactcctccttcatcattagatgcttttgaatccctcaacttatcaaacgcctg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
21115759 |
tttgcaaataatcatagcttaatttaaggcaacttaaagtagtcctcactcctccttcatcattggatgcctttgaatccctcaacttatctaacgcctg |
21115660 |
T |
|
| Q |
311 |
ctgccacaactcaatttcatgccttccttttaaggacgaccctatagttttgattgataagggaagtccattacactcattgcagacttcccgtggcaca |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21115659 |
ctgccacaactcaatttcatgccttccttttaaggacgaccctatagttttgattgataagggaagtccattacactcattgcagacttcccgtggcaca |
21115560 |
T |
|
| Q |
411 |
ccatccaataacttggagtattcgtcatcaattcttgcaaacttttggaataatgtccaagattcatcttcagacaagagccc |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21115559 |
ccatccaataacttggagtattcgtcatcaattcttgcaaacttttggaataatgtccaagattcatcttcagacaagagccc |
21115477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 493
Target Start/End: Complemental strand, 21123043 - 21122904
Alignment:
| Q |
354 |
atagttttgattgataagggaagtccattacactcattgcagacttcccgtggcacaccatccaataacttggagtattcgtcatcaattcttgcaaact |
453 |
Q |
| |
|
||||||||||||| |||||||||||| || || |||| ||||| ||| |||| |||||||| ||| || ||| |||||||||||||| ||||| || |
|
|
| T |
21123043 |
atagttttgattgctaagggaagtcccttgcattcatagcagatttcttgtggtacaccatctaatgacacagagaattcgtcatcaattactgcaagct |
21122944 |
T |
|
| Q |
454 |
tttggaataatgtccaagattcatcttcagacaagagccc |
493 |
Q |
| |
|
||||||| |||||||| |||||||||| ||||||||||| |
|
|
| T |
21122943 |
tttggaagaatgtccaggattcatctttggacaagagccc |
21122904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University