View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2534_low_7 (Length: 482)
Name: NF2534_low_7
Description: NF2534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2534_low_7 |
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| [»] scaffold0283 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 15 - 465
Target Start/End: Original strand, 44966330 - 44966777
Alignment:
| Q |
15 |
aatcatctcttattctcaacgcaatcgatcaacaaaa-taaatccaacctggtctagcctgccaagcacttcctccctacaaattgcttcgtcttgattc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44966330 |
aatcatctcttattctcaacgcaatcgatcaacaaaaataaatccaacctggtctagcctgccaagcacttcctccctacaaatcgcttcgtcttgattc |
44966429 |
T |
|
| Q |
114 |
tcatacaagccggcgtcttgcaagtactaaacattaaacaagcaaaatccaaattcagcacaacatagctagtaaaatctcaaaaacagataataatcaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44966430 |
tcatacaagccggcgtcttgcaagtactaaacattaaacaagcaaaatccaaattcagcacaacatagctagaaaaatctcaaaaacagataataatcaa |
44966529 |
T |
|
| Q |
214 |
tttgctataggcgcaaaaacagaaccttctcgagctcatgcgtcttggcgacatcatattcagtcggtccgctcaatgagatcgggtccgttatccctaa |
313 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| |
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| T |
44966530 |
tttgctataggcgcaaaaacataaccttctcgagctcacgcgtcttggcgacatcatattcagtcggtccgctcaatgagattggctcggttatccctaa |
44966629 |
T |
|
| Q |
314 |
cctttgccgctgcccgatatcgcggttgcttaacccagtgctccccatcaagaacaaattactacactttattttannnnnnngatatattattattgca |
413 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| |
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| T |
44966630 |
cctttgccgctgcccgatatcgcagttgcttaacccagtgctccccatcaacaacaaattactacactttttttt----ttttgatatattattattgca |
44966725 |
T |
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| Q |
414 |
ataagtaaatatatattcttagaatggtataacgctttgttattattacttt |
465 |
Q |
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| T |
44966726 |
ataagtaaatatatattctaagaatggtataacgctttgttattattacttt |
44966777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 15 - 465
Target Start/End: Original strand, 12464 - 12911
Alignment:
| Q |
15 |
aatcatctcttattctcaacgcaatcgatcaacaaaa-taaatccaacctggtctagcctgccaagcacttcctccctacaaattgcttcgtcttgattc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12464 |
aatcatctcttattctcaacgcaatcgatcaacaaaaataaatccaacctggtctagcctgccaagcacttcctccctacaaatcgcttcgtcttgattc |
12563 |
T |
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| Q |
114 |
tcatacaagccggcgtcttgcaagtactaaacattaaacaagcaaaatccaaattcagcacaacatagctagtaaaatctcaaaaacagataataatcaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12564 |
tcatacaagccggcgtcttgcaagtactaaacattaaacaagcaaaatccaaattcagcacaacatagctagaaaaatctcaaaaacagataataatcaa |
12663 |
T |
|
| Q |
214 |
tttgctataggcgcaaaaacagaaccttctcgagctcatgcgtcttggcgacatcatattcagtcggtccgctcaatgagatcgggtccgttatccctaa |
313 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| |
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| T |
12664 |
tttgctataggcgcaaaaacataaccttctcgagctcacgcgtcttggcgacatcatattcagtcggtccgctcaatgagattggctcggttatccctaa |
12763 |
T |
|
| Q |
314 |
cctttgccgctgcccgatatcgcggttgcttaacccagtgctccccatcaagaacaaattactacactttattttannnnnnngatatattattattgca |
413 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| |
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| T |
12764 |
cctttgccgctgcccgatatcgcagttgctaaacccagtgctccccatcaacaacaaattactacactttttttt----ttttgatatattattattgca |
12859 |
T |
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| Q |
414 |
ataagtaaatatatattcttagaatggtataacgctttgttattattacttt |
465 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12860 |
ataagtaaatatatattctaagaatggtataacgctttgttattattacttt |
12911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 30600789 - 30600701
Alignment:
| Q |
58 |
caacctggtctagcctgccaagcacttcctccctacaaattgcttcgtcttgattctcatacaagccggcgtcttgcaagtactaaaca |
146 |
Q |
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|||||||||| || |||||||||||||||||||||| || ||| || | ||| |||||||||| || ||| |||||||||||| |||| |
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| T |
30600789 |
caacctggtccagtctgccaagcacttcctccctaccaactgcctcctgctgactctcatacaatccagcgccttgcaagtactgaaca |
30600701 |
T |
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