View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2534_low_8 (Length: 428)
Name: NF2534_low_8
Description: NF2534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2534_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 33791050 - 33791470
Alignment:
| Q |
1 |
gcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacaggaa |
100 |
Q |
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| T |
33791050 |
gcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattctgttgtcttagcaggtggaccaagttacaatgttcctacaggaa |
33791149 |
T |
|
| Q |
101 |
gacgtgatggattagtatcaactgttaatgatgtacatcttccagggccagaatcctcaatttctcaaacattacaagcttttaaatccaaaggtatgac |
200 |
Q |
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| T |
33791150 |
gacgtgatggattagtatcaactgttaatgatgtacatcttccagggccagaatcctcaatttctcaaacattacaagcttttaaatccaaaggtatgac |
33791249 |
T |
|
| Q |
201 |
attggaagaaatggttacacttttaggagcacacactgttggatttgctcattgtagtttcattggaaaaagacttggtagtaatgatagttcaatggac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33791250 |
attggaagaaatggttacacttttaggagcacacactgttggatttgctcattgtagtttcattggaaaaagacttggtagtaatgatagttcaatggac |
33791349 |
T |
|
| Q |
301 |
cctaatttaaggaaaacgttggttcaatggtgtggtgttgaaggtaaggatccattggtgtttttggatcaaaacacttcttttgtgtttgatcatcaat |
400 |
Q |
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| T |
33791350 |
cctaatttaagaaaaaggttggttcaatggtgtggtgttgaaggtaaggatccattagtgtttttggatcaaaacacttcttttgtttttgatcatcaat |
33791449 |
T |
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| Q |
401 |
tttataatcagattttcttgg |
421 |
Q |
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| T |
33791450 |
tttataatcagattttgttgg |
33791470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 33764211 - 33764098
Alignment:
| Q |
1 |
gcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacaggaa |
100 |
Q |
| |
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|||||||||||||| ||||||||||||||||| || || | || ||||||||| | || | |||| | || ||||||| |||||| |||||||||||| |
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| T |
33764211 |
gcatgtccatcaacggtttcatgtgcagacatcgtagcacttgctacaagagatgctgtggccttatctggaggaccaaaatacaatattcctacaggaa |
33764112 |
T |
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| Q |
101 |
gacgtgatggatta |
114 |
Q |
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||||||| |||||| |
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| T |
33764111 |
gacgtgacggatta |
33764098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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