View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2535_high_17 (Length: 237)
Name: NF2535_high_17
Description: NF2535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2535_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 30393504 - 30393719
Alignment:
| Q |
1 |
aacctaccataccaagaactagtaacaaaatgttggtatggaatttatataaagacactagagtttgtttcaatgagtatctagaaaatttaaaatgaca |
100 |
Q |
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| T |
30393504 |
aacctaccataccaagaactagtaacaaaatgttggtatggaatttatataaagacactagagtttgtttcaatgagtatctagaaaatttaaaatgaca |
30393603 |
T |
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| Q |
101 |
ataattggctaaagaccttccaaaactaagaaaaccaaaacctgttgttgctaatagctataaaaatgagattatgaagggaaattttgcatgacacatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30393604 |
ataattggctaaagaccttccaaaactaagaaaaccaaaacctgttgtttctaatagctataaaaatgagattatgaagggaaattttgcatgacacatt |
30393703 |
T |
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| Q |
201 |
gatagatggattgtga |
216 |
Q |
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|||||||||||||||| |
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| T |
30393704 |
gatagatggattgtga |
30393719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 30407125 - 30407313
Alignment:
| Q |
26 |
caaaatgttggtatggaatttatataaagacactagagtttgtttcaatgagtatctagaaaatttaaaatgacaataattggctaaagaccttccaaaa |
125 |
Q |
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|||||| ||||||||||| || |||||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
30407125 |
caaaatattggtatggaaattgtataaagacactagtgt--gtttcaatgagtatctagaaaatttaaaatgataatgattggctaaagaccttccaaaa |
30407222 |
T |
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| Q |
126 |
ctaagaaaaccaaaacctgttgttgctaatagctataaaaatgagattatgaagggaaattttgcatgacacattgatagatggattgtga |
216 |
Q |
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| T |
30407223 |
ctaagaaaaccaaaacctgttgttgctaatagctataaaaatgagattatgaagggaaattttgcatgacacattgatagatggattgtga |
30407313 |
T |
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