View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2535_high_5 (Length: 488)
Name: NF2535_high_5
Description: NF2535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2535_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Complemental strand, 46632579 - 46632117
Alignment:
| Q |
19 |
ttgagctgtactgaagcaatcctcaaaatggccactgcatgcttttggactcaattctgttaaagctgatggagctggtgatactttgtagttttcttct |
118 |
Q |
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| T |
46632579 |
ttgagctgtactgaagcaatcctcaaaatggccactgcatgcttttggactcaattctgttaaagctgatggagctggtgatactttgtagttttcttct |
46632480 |
T |
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| Q |
119 |
ttcgtgtaggaaccatttatggaatatctattttcagattgctcataatgttgtctatttacactgctgcttctgcttgtagagttgccttttgattcac |
218 |
Q |
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| T |
46632479 |
ttcgtataggaaccatttatggaatatctattttcagattgctcataatgttgtctatttacactgctgcttctgcttgtagagttgccttttgattcac |
46632380 |
T |
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| Q |
219 |
aaaaatccatctccacaattttgatgttgtcttccaagcctctgtccatttcctacatgcacaaaaccgaatttcatgactataactacttcatattgtt |
318 |
Q |
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| T |
46632379 |
aaaaatccatctccacaattttgatgttgtcttccaagcctctgtccatttcctacatgcacaaaaccgaatttcatgactagaactacttcatattgtt |
46632280 |
T |
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| Q |
319 |
cctcatttggatagactaaacaattttataatgtaacatgttttactttggattttacaacacacaaaagaagcaattttctaggcactaattgagtttt |
418 |
Q |
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| T |
46632279 |
cctcatttggatagactaaacaattttataatgtaacatgttttactttggattttacaacacacaaaagaagcaattttctaggcactaattgagtttt |
46632180 |
T |
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| Q |
419 |
aagtttacttaaacnnnnnnntttgagttttaagaataagtttgttaattcccgtgacctatg |
481 |
Q |
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| T |
46632179 |
aagtttactcaagcaaaaaaaattgagttttaagaataagtttgttaattcccgtgacctatg |
46632117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 11979843 - 11979706
Alignment:
| Q |
103 |
tttgtagttttcttctttcgtgtaggaaccatttatggaatatctattttcagattgctcataatgt---tgtctatt-tacactgctgcttctgcttgt |
198 |
Q |
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|||||| ||||||||||| | ||||||||||||| |||||||||||| |||| |||| ||||||||| | | || | ||||||| |||||||||||| |
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| T |
11979843 |
tttgtatttttcttcttttgagtaggaaccatttgtggaatatctatgttcaaattgttcataatgtccatttgtaatatacactgttgcttctgcttgc |
11979744 |
T |
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| Q |
199 |
agagttgccttttgattcacaaaaatccatctccacaa |
236 |
Q |
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||| || || |||||||||||||||||||||||||||| |
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| T |
11979743 |
agaattaccatttgattcacaaaaatccatctccacaa |
11979706 |
T |
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