View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2535_low_1 (Length: 627)

Name: NF2535_low_1
Description: NF2535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2535_low_1
NF2535_low_1
[»] chr8 (6 HSPs)
chr8 (302-611)||(12811735-12812044)
chr8 (10-219)||(12812127-12812337)
chr8 (345-421)||(34830887-34830963)
chr8 (309-400)||(12772272-12772363)
chr8 (309-400)||(12791132-12791223)
chr8 (327-391)||(36350283-36350347)
[»] chr7 (4 HSPs)
chr7 (302-431)||(28470206-28470335)
chr7 (324-425)||(5230011-5230112)
chr7 (330-401)||(28500179-28500250)
chr7 (321-385)||(5251521-5251585)
[»] chr4 (1 HSPs)
chr4 (324-424)||(45671441-45671541)
[»] chr2 (4 HSPs)
chr2 (311-379)||(30642895-30642962)
chr2 (309-409)||(5546365-5546465)
chr2 (304-391)||(25524843-25524930)
chr2 (312-384)||(2115277-2115349)
[»] chr5 (2 HSPs)
chr5 (319-421)||(20543490-20543592)
chr5 (306-385)||(20514719-20514798)
[»] chr6 (2 HSPs)
chr6 (304-412)||(22611520-22611628)
chr6 (319-400)||(5652925-5653006)
[»] chr1 (2 HSPs)
chr1 (309-400)||(46039609-46039700)
chr1 (318-402)||(15609497-15609581)
[»] chr3 (2 HSPs)
chr3 (306-367)||(47271129-47271190)
chr3 (342-423)||(249323-249404)


Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 302 - 611
Target Start/End: Complemental strand, 12812044 - 12811735
Alignment:
Q  302 ccggcaggtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctct 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12812044 ccggcaggtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctct 12811945  T
Q  402 agccgtggcaaactctatgaatttggaagtgttgggtaannnnnnnatagatctatttattaattgtttgaaagtttcaattttattgtctatttttgtg 501  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12811944 agccgtggcaaactctatgaatttggaagtgttgggtaatttttttatagatctatttattaattgtttgaaagtttcaattttattgtctatttttgtg 12811845  T
Q  502 aggtccaaatcccaatggttaatagaatcatttattttctttcttatagttttgtattttgggttttgtgatgatgtgaactgagatattgtgatgcata 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  12811844 aggtccaaatcccaatggttaatagaatcatttattttctttcttatagttttgtattttgggttttgtgatgatgtgaactgagatattgtgatgtata 12811745  T
Q  602 acttcttctt 611  Q
    ||||||||||    
T  12811744 acttcttctt 12811735  T

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Target: chr8; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 12812337 - 12812127
Alignment:
Q  10 attatactataattaaataggaaaaagagaataatataaaaattaagaataatttttgtttccannnnnnngtnnnnnnn-gttctcaagtgtgtgtgtc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||        ||||||||||||||||  |    
T  12812337 attatactataattaaataggaaaaagagaataatataaaaattaagaataatttttgtttccatttttttgtaaaaaaaagttctcaagtgtgtgt--c 12812240  T
Q  109 cctttttatatagcacacaaactttcatttctcactacaaaaatttatattctctc--tcnnnnnnnccatattgcactaaatcactataaataaagtta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |        |||||||||||||||||||||||||||||||||    
T  12812239 cctttttatatagcacacaaactttcatttctcactacaaaaatttatattctctctttttttttttccatattgcactaaatcactataaataaagtta 12812140  T
Q  207 gagtttatttctt 219  Q
    |||||||||||||    
T  12812139 gagtttatttctt 12812127  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 34830963 - 34830887
Alignment:
Q  345 aaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaaactctatga 421  Q
    |||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||| | | | || |||||||||||    
T  34830963 aaagcttatgaactttctgttctttgtgatgctgaagttgctcttatcatcttctccaacagaggaaaactctatga 34830887  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 400
Target Start/End: Original strand, 12772272 - 12772363
Alignment:
Q  309 gtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctc 400  Q
    ||||| |||||||| ||||||||||||||| | ||||| || | ||||||||| ||  | ||||||||||| ||||| |||||  |||||||    
T  12772272 gtaacattctcaaagagaagaaatggtttgttgaagaaggcctttgaactgtcagtgttatgtgatgctgaggttgctcttattgttttctc 12772363  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 400
Target Start/End: Original strand, 12791132 - 12791223
Alignment:
Q  309 gtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctc 400  Q
    ||||| |||||||| ||||||||||||||| | ||||| || | ||||||||| ||  | ||||||||||| ||||| |||||  |||||||    
T  12791132 gtaacattctcaaagagaagaaatggtttgttgaagaaggcctttgaactgtcagtgttatgtgatgctgaggttgctcttattgttttctc 12791223  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 36350283 - 36350347
Alignment:
Q  327 agaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttat 391  Q
    |||||||| ||||| ||||| || |||||| | ||||| || ||||||||||||||||| |||||    
T  36350283 agaaatggcttgcttaagaaggcatatgaattatctgtgctttgtgatgctgaagttgctcttat 36350347  T

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Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 302 - 431
Target Start/End: Original strand, 28470206 - 28470335
Alignment:
Q  302 ccggcaggtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctct 401  Q
    |||||| || ||||||||||||||||||||||||||||| || ||||| |||||||| || ||||| |||||||||||  |||| ||||||||||||||     
T  28470206 ccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctca 28470305  T
Q  402 agccgtggcaaactctatgaatttggaagt 431  Q
    || ||||| || || | |||||||| ||||    
T  28470306 agtcgtggaaagctttctgaatttgcaagt 28470335  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 324 - 425
Target Start/End: Original strand, 5230011 - 5230112
Alignment:
Q  324 agaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaaactctatgaat 423  Q
    |||||||||||| | || ||||||||||||||||| |||||||| ||||||||||| ||||| |||||||| ||||| |  ||||| || || |||||||    
T  5230011 agaagaaatggtcttcttaagaaagcttatgaactttctgttctttgtgatgctgaggttgctcttatcatcttctccactcgtggaaagctttatgaat 5230110  T
Q  424 tt 425  Q
    ||    
T  5230111 tt 5230112  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 401
Target Start/End: Complemental strand, 28500250 - 28500179
Alignment:
Q  330 aatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctct 401  Q
    ||||||||| | |||||||| | ||| || |||||||||||||||||||||||||| |||||||| ||||||    
T  28500250 aatggtttgttgaagaaagcatttgagctatctgttctctgtgatgctgaagttgctcttatcatcttctct 28500179  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 385
Target Start/End: Original strand, 5251521 - 5251585
Alignment:
Q  321 aaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgc 385  Q
    |||||||||| |||  | |||||||||||| ||||| | |||||||| ||||||||| |||||||    
T  5251521 aaaagaagaactggacttctcaagaaagctaatgaaatttctgttctttgtgatgctcaagttgc 5251585  T

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Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 324 - 424
Target Start/End: Original strand, 45671441 - 45671541
Alignment:
Q  324 agaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaaactctatgaat 423  Q
    |||||||||||| | |||||||| ||||||||||| || ||||| ||||||||||||||||| |||||||| ||||| | |||||||||||| |||||||    
T  45671441 agaagaaatggtgtactcaagaaggcttatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctccaaccgtggcaaactatatgaat 45671540  T
Q  424 t 424  Q
    |    
T  45671541 t 45671541  T

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Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 311 - 379
Target Start/End: Complemental strand, 30642962 - 30642895
Alignment:
Q  311 aactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctga 379  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  30642962 aactttctcaaagagaagaaatggtttgctcaaaaaagcttatgaactgtctgttc-ctgtgatgctga 30642895  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 309 - 409
Target Start/End: Original strand, 5546365 - 5546465
Alignment:
Q  309 gtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtg 408  Q
    ||||||||||  |||||||||||||||||| | |||||||| |||||| | |||||||| |||||||| |||||||| |||||  | |||||||||||||    
T  5546365 gtaactttctgcaaaagaagaaatggtttgttgaagaaagcatatgaattatctgttctttgtgatgcagaagttgctcttatagtcttctctagccgtg 5546464  T
Q  409 g 409  Q
    |    
T  5546465 g 5546465  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 304 - 391
Target Start/End: Original strand, 25524843 - 25524930
Alignment:
Q  304 ggcaggtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttat 391  Q
    |||| |||||||| ||||| ||||||  |||||| |||||||||||| ||||  | ||||| || ||||||||||||||||| |||||    
T  25524843 ggcaagtaactttttcaaagagaagatctggtttactcaagaaagctcatgagatctctgtgctttgtgatgctgaagttgctcttat 25524930  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 384
Target Start/End: Original strand, 2115277 - 2115349
Alignment:
Q  312 actttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttg 384  Q
    ||||||||||||||||||||||| ||| | ||||||||  | ||| | ||  |||| ||||||||||||||||    
T  2115277 actttctcaaaaagaagaaatggattgttgaagaaagcaaaagaattatccattctttgtgatgctgaagttg 2115349  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 319 - 421
Target Start/End: Complemental strand, 20543592 - 20543490
Alignment:
Q  319 caaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaaactcta 418  Q
    |||| |||||||||||  |||| ||||| ||||||||||| ||| | || ||||||||||| ||||| || || ||||||||||||||||| ||||||||    
T  20543592 caaagagaagaaatggaatgctgaagaaggcttatgaactctctctcctttgtgatgctgaggttgctctcattattttctctagccgtggaaaactcta 20543493  T
Q  419 tga 421  Q
    |||    
T  20543492 tga 20543490  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 385
Target Start/End: Complemental strand, 20514798 - 20514719
Alignment:
Q  306 caggtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgc 385  Q
    ||||| |||||||||||||| | ||  |||||||||||||||||| | ||| | |||||||| |||||||||||||||||    
T  20514798 caggttactttctcaaaaaggaaaaccggtttgctcaagaaagctaaagaaatatctgttctttgtgatgctgaagttgc 20514719  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 412
Target Start/End: Original strand, 22611520 - 22611628
Alignment:
Q  304 ggcaggtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctag 403  Q
    |||| ||||| |||||||| ||||||| ||| ||| | |||||||| | ||| || | |||||| ||||||||||||||||| ||||||||||| || ||    
T  22611520 ggcaagtaacattctcaaagagaagaagtggattgttgaagaaagcctttgagctttgtgttctatgtgatgctgaagttgcacttatcattttttcaag 22611619  T
Q  404 ccgtggcaa 412  Q
    |||||||||    
T  22611620 ccgtggcaa 22611628  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 319 - 400
Target Start/End: Original strand, 5652925 - 5653006
Alignment:
Q  319 caaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctc 400  Q
    |||| |||||||||||  | || ||||||||||||||| | |||||||| ||||||||||||||||| ||||| || |||||    
T  5652925 caaagagaagaaatggacttcttaagaaagcttatgaattatctgttctttgtgatgctgaagttgctcttattatcttctc 5653006  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 400
Target Start/End: Complemental strand, 46039700 - 46039609
Alignment:
Q  309 gtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctc 400  Q
    ||||| || ||||| ||||||| ||||||| | |||||||||| |||||| |||||  | ||||||||||||||||| |||||||| |||||    
T  46039700 gtaacattttcaaagagaagaagtggtttgttgaagaaagcttttgaactttctgtgttatgtgatgctgaagttgctcttatcatcttctc 46039609  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 15609497 - 15609581
Alignment:
Q  318 tcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctcta 402  Q
    ||||||||| | ||||||||| ||||||||||| | ||| ||||| |||| |||||||| || |||||  ||||| | |||||||    
T  15609497 tcaaaaagacgcaatggtttgttcaagaaagctcaagaattgtctattctttgtgatgccgaggttgctgttatcgtattctcta 15609581  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 306 - 367
Target Start/End: Complemental strand, 47271190 - 47271129
Alignment:
Q  306 caggtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttct 367  Q
    ||||| ||||||||||| ||||| ||||||||  ||||||||||||||||||| ||||||||    
T  47271190 caggttactttctcaaagagaaggaatggtttaatcaagaaagcttatgaactttctgttct 47271129  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 342 - 423
Target Start/End: Complemental strand, 249404 - 249323
Alignment:
Q  342 aagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaaactctatgaat 423  Q
    ||||||||||||||||| || ||| | ||||||||||||||||| || ||  | ||||| |||||||||| ||| |||||||    
T  249404 aagaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctccagccgtggcagactttatgaat 249323  T

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