View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2535_low_11 (Length: 276)
Name: NF2535_low_11
Description: NF2535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2535_low_11 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 2591534 - 2591295
Alignment:
| Q |
14 |
catatatcatatatatctttgtaattaagattcttaaataaaaataaaaccgtgatttataagcatacatttagagaaaaacttgactagaattttgttg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2591534 |
catatatcatatatatctttgtaattaagattcttaaataaaaataaaaccgtgatttataagcatacatttagagaaaaacttgactagaattttgttg |
2591435 |
T |
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| Q |
114 |
gttgtgaaaaaggatgtatgctaaacaaacactgaaaacggacgagaatatatttgaactgacagaattgccatcttaacttccctaaaactatagattg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2591434 |
gttgtgaaaaaggatgtatgctaaacaaacactgaaaacggacgagaataaatttgaaccgacagaattgccatcttaacttccctaaaactatagattg |
2591335 |
T |
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| Q |
214 |
cttcattaataaataatatctgttcttatgtttaatttta |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
2591334 |
cttcattaataaataatatctgttcttatgtttaatttta |
2591295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 276
Target Start/End: Complemental strand, 8647989 - 8647961
Alignment:
| Q |
248 |
attttaggcttaattacacttttggtcct |
276 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
8647989 |
attttaggcttaattacacttttggtcct |
8647961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 245 - 276
Target Start/End: Complemental strand, 26538633 - 26538602
Alignment:
| Q |
245 |
ttaattttaggcttaattacacttttggtcct |
276 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
26538633 |
ttaattttaggcttaattacacttttggtcct |
26538602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 247 - 276
Target Start/End: Complemental strand, 48248145 - 48248116
Alignment:
| Q |
247 |
aattttaggcttaattacacttttggtcct |
276 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
48248145 |
aattttaggcttaattacacttttggtcct |
48248116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 276
Target Start/End: Original strand, 16917707 - 16917735
Alignment:
| Q |
248 |
attttaggcttaattacacttttggtcct |
276 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
16917707 |
attttaggcttaattacacttttggtcct |
16917735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 276
Target Start/End: Complemental strand, 38859192 - 38859164
Alignment:
| Q |
248 |
attttaggcttaattacacttttggtcct |
276 |
Q |
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|
||||||||||||||||||||||||||||| |
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| T |
38859192 |
attttaggcttaattacacttttggtcct |
38859164 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 247 - 276
Target Start/End: Original strand, 11444980 - 11445009
Alignment:
| Q |
247 |
aattttaggcttaattacacttttggtcct |
276 |
Q |
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|
|||||||||||||||||||||||||||||| |
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| T |
11444980 |
aattttaggcttaattacacttttggtcct |
11445009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 276
Target Start/End: Complemental strand, 5121021 - 5120993
Alignment:
| Q |
248 |
attttaggcttaattacacttttggtcct |
276 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
5121021 |
attttaggcttaattacacttttggtcct |
5120993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 276
Target Start/End: Original strand, 11656449 - 11656477
Alignment:
| Q |
248 |
attttaggcttaattacacttttggtcct |
276 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
11656449 |
attttaggcttaattacacttttggtcct |
11656477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 276
Target Start/End: Complemental strand, 43973991 - 43973963
Alignment:
| Q |
248 |
attttaggcttaattacacttttggtcct |
276 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
43973991 |
attttaggcttaattacacttttggtcct |
43973963 |
T |
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