View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2535_low_12 (Length: 273)
Name: NF2535_low_12
Description: NF2535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2535_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 55956107 - 55956346
Alignment:
| Q |
15 |
caaaggtacttaccaaagaaaaagctgttttagtaacattaagtggtagtgaaagtgaaacttgaattgattgtatgagcttttgcacctcttcttctct |
114 |
Q |
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| T |
55956107 |
caaaggtacttaccaaagaaaaagctgttttagtaacattaagtggtagtgaaagtgaaacttgaattgattgtatgagcttttgcacctcttcttctct |
55956206 |
T |
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| Q |
115 |
aatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgtctccaataatcaccgtatggagcataaacaata |
214 |
Q |
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| T |
55956207 |
aatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgtctccaataatcaccgtatggagcataaacaata |
55956306 |
T |
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| Q |
215 |
tctgttgaatcatatgataatattttaggagctaggagtt |
254 |
Q |
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| T |
55956307 |
tctgttgaatcatatgataatattttaggagctaggagtt |
55956346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 55959551 - 55959796
Alignment:
| Q |
15 |
caaaggtacttaccaaagaaaaagctgttttagtaacattaagtggtagtgaaagtgaaacttgaattgattgtatgagcttttgcacctcttcttctct |
114 |
Q |
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| T |
55959551 |
caaaggtacttaccaaagagaaagctattttagtaacatcaagtggtagtgaaagtgaaccttgaatggattgtataagcttttctacctcatcttctct |
55959650 |
T |
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| Q |
115 |
aatggaagaaaaataatgaacccttttagcactaa-----gaagctgtgatgtacatattttcctcatctgtctccaataatcaccgtatggagcataaa |
209 |
Q |
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| T |
55959651 |
aatggaagaaaaagattgaacccttttagcactaatataagaagttctgatgtacatattttcctcatttgtctccaataatcaccgtatggagcaaaga |
55959750 |
T |
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| Q |
210 |
caatatctgttgaatcatatgataatattttaggagctaggagttt |
255 |
Q |
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| T |
55959751 |
caataccagttgaatcataggctaatatattaggagcaatgagttt |
55959796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 84 - 251
Target Start/End: Original strand, 12426506 - 12426673
Alignment:
| Q |
84 |
attgtatgagcttttgcacctcttcttctctaatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgtct |
183 |
Q |
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| T |
12426506 |
attgtatcatcttttccaccccatcttctctaatggaagaaaaagattggacccttttagcactaagaagttctgatgtacatatttttctcatctgtct |
12426605 |
T |
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| Q |
184 |
ccaataatcaccgtatggagcataaacaatatctgttgaatcatatgataatattttaggagctagga |
251 |
Q |
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| T |
12426606 |
ccaataatcaccatatgaagcaaagataatatcttttgattcatatgttaatatatttggagctagga |
12426673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 12266314 - 12266198
Alignment:
| Q |
84 |
attgtatgagcttttgcacctcttcttctctaatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgtct |
183 |
Q |
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||||||| | ||||| |||| | ||||||||||||||||||||| | || |||||||||||||||||||| | ||||||||||||||| ||||||||||| |
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| T |
12266314 |
attgtatcatcttttccaccccatcttctctaatggaagaaaaagattggacccttttagcactaagaagttctgatgtacatatttttctcatctgtct |
12266215 |
T |
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| Q |
184 |
ccaataatcaccgtatg |
200 |
Q |
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| T |
12266214 |
ccaataatcaccatatg |
12266198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 107 - 217
Target Start/End: Complemental strand, 7140753 - 7140643
Alignment:
| Q |
107 |
tcttctctaatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgtctccaataatcaccgtatggagcat |
206 |
Q |
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| T |
7140753 |
tcttctctaatgtaagaaaaagattgaacccttttagcacttagaatctctaagacacatatttttctcatttgtctccaataatcaccatatggagaaa |
7140654 |
T |
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| Q |
207 |
aaacaatatct |
217 |
Q |
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| T |
7140653 |
atacaatatct |
7140643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 7130335 - 7130269
Alignment:
| Q |
162 |
tacatattttcctcatctgtctccaataatcaccgtatggagcataaacaatatctgttgaatcata |
228 |
Q |
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| T |
7130335 |
tacatatttttctcatttgtctccaataatcaccatatggagaaaatgcaatatcttttgaaccata |
7130269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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