View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2535_low_14 (Length: 251)
Name: NF2535_low_14
Description: NF2535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2535_low_14 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 46631566 - 46631806
Alignment:
| Q |
11 |
agcataggcaacactcagatgtatgcaggctctggtcacagcacaagctagagctcgtgctcaaaggatccgaatggtgtcagaaggaaagcctcatcta |
110 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46631566 |
agcaaaggcaacactcagatgtatgcaagatctggtcacagcacaagctagagctcgtgctcaaaggatccgaatggtgtcagaaggaaagcctcatcta |
46631665 |
T |
|
| Q |
111 |
aatcacagaaatgctatggaaaatgacttgttcaggcaaatatataatgttagttctcttactactactaattaataattatcttttcttaccaatttga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46631666 |
aatcacagaaatgctatggaaaatgacttgttcaggcaaatatataatgttagttctcttactactactaattaataattatcttttcttaccaatttga |
46631765 |
T |
|
| Q |
211 |
atttgattgttgaaattttctgaattgatgtcataaacatg |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46631766 |
atttgattgttgaaattttctgaattgatgtcataaacatg |
46631806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 15505848 - 15505904
Alignment:
| Q |
21 |
acactcagatgtatgcaggctctggtcacagcacaagctagagctcgtgctcaaagg |
77 |
Q |
| |
|
||||| ||||| ||||| ||| |||||| ||||||||| |||||| ||||||||||| |
|
|
| T |
15505848 |
acactaagatgcatgcaagctttggtcatagcacaagcaagagcttgtgctcaaagg |
15505904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University