View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2535_low_16 (Length: 249)
Name: NF2535_low_16
Description: NF2535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2535_low_16 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 35995233 - 35995002
Alignment:
| Q |
18 |
tggacaatgatcttatgagatcaataatgatttgacatttttattaaaaaattcaaattgagatataaagggagactgagagcagatacttccggatctt |
117 |
Q |
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| T |
35995233 |
tggacaatgatcttatgagatcaataatgatttgacatttttattaaaaaattcaaattgagatataaagggagactgagagcagatacttccggatctt |
35995134 |
T |
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| Q |
118 |
ccttgccaaacaagcttattctattttatttttcttcacctttatatgatatgatactcacactttcttcacttggtttaaagttttcattctactcttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35995133 |
ccttgccaaacaagcttattctattttatttttcttcacctttatatgatatgatactcacactttcttcacttggtttaaagttttcattctactcttg |
35995034 |
T |
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| Q |
218 |
tcgaaagaaaagttttattcttctctattttt |
249 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
35995033 |
tcgaaagaaaagttttattcttctctattttt |
35995002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 35999901 - 35999669
Alignment:
| Q |
18 |
tggacaatgatcttatgagatcaataatgatttgacatttttattaaaaaa-ttcaaattgagatataaagggagactgagagcagatacttccggatct |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35999901 |
tggacaatgatcttatgagatcaataatgatttgacatttttattaaaaaaattcaaattgagatataaagggagactgagagcacatacttccggatct |
35999802 |
T |
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| Q |
117 |
tccttgccaaacaagcttattctattttatttttcttcacctttatatgatatgatactcacactttcttcacttggtttaaagttttcattctactctt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35999801 |
tccttgccaaacaagcttattctattttatttttcttcacctttatatgatatgatactcacactttctgcacttggtttaaagttttcattctactctt |
35999702 |
T |
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| Q |
217 |
gtcgaaagaaaagttttattcttctctattttt |
249 |
Q |
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| T |
35999701 |
gtcgaaagaaaagttttattcttctctattttt |
35999669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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