View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2535_low_17 (Length: 247)

Name: NF2535_low_17
Description: NF2535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2535_low_17
NF2535_low_17
[»] chr5 (2 HSPs)
chr5 (21-237)||(4639723-4639942)
chr5 (1-29)||(13952252-13952280)
[»] chr1 (3 HSPs)
chr1 (1-31)||(3163166-3163196)
chr1 (1-31)||(24589489-24589519)
chr1 (1-30)||(32145345-32145374)
[»] chr4 (3 HSPs)
chr4 (1-30)||(21634831-21634860)
chr4 (1-34)||(34016755-34016788)
chr4 (1-30)||(54315316-54315345)
[»] chr2 (1 HSPs)
chr2 (1-30)||(42056299-42056328)
[»] chr8 (1 HSPs)
chr8 (1-29)||(39284459-39284487)
[»] chr6 (2 HSPs)
chr6 (1-29)||(15989849-15989877)
chr6 (1-29)||(17941601-17941629)


Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 21 - 237
Target Start/End: Original strand, 4639723 - 4639942
Alignment:
Q  21 tatatttttatggaagaataacatcgaaatgcgagaattcgcaatttaatatacgactaaacataccttaagtcttgagttcgaatcctgaatgtctccg 120  Q
    |||||||| || ||||||| ||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  4639723 tatattttcatagaagaatgacatcaaaatgcgagaattcgcactttaatatacgaccaaacataccttaagtcttgagttcgaatcctgaatgtttccg 4639822  T
Q  121 atattatgaaaaatgaggggtaaatttggaaaacgaaggttgaaaaatgtatgcattaagtgtaagaaaagttgatcga---ccataatgagatgttact 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||||||||||||||||||    
T  4639823 atattatgaaaaatgaggggtaaatttggaaaacgaaggttgaaaaatgtatgtattaagtgtaagaaaagttgatcgacctccataatgagatgttact 4639922  T
Q  218 tttttctgcatatgtctgtg 237  Q
    ||||||||||||||| ||||    
T  4639923 tttttctgcatatgtttgtg 4639942  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 13952252 - 13952280
Alignment:
Q  1 acaatttgggacggagggagtatattttt 29  Q
    |||||||||||||||||||||||||||||    
T  13952252 acaatttgggacggagggagtatattttt 13952280  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 3163196 - 3163166
Alignment:
Q  1 acaatttgggacggagggagtatatttttat 31  Q
    |||||||||||||||||||||||||||||||    
T  3163196 acaatttgggacggagggagtatatttttat 3163166  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 24589519 - 24589489
Alignment:
Q  1 acaatttgggacggagggagtatatttttat 31  Q
    |||||||||||||||||||||||||||||||    
T  24589519 acaatttgggacggagggagtatatttttat 24589489  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 32145374 - 32145345
Alignment:
Q  1 acaatttgggacggagggagtatattttta 30  Q
    ||||||||||||||||||||||||||||||    
T  32145374 acaatttgggacggagggagtatattttta 32145345  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 21634831 - 21634860
Alignment:
Q  1 acaatttgggacggagggagtatattttta 30  Q
    ||||||||||||||||||||||||||||||    
T  21634831 acaatttgggacggagggagtatattttta 21634860  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 34016788 - 34016755
Alignment:
Q  1 acaatttgggacggagggagtatatttttatgga 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  34016788 acaatttgggacggagggagtatctttttatgga 34016755  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 54315316 - 54315345
Alignment:
Q  1 acaatttgggacggagggagtatattttta 30  Q
    ||||||||||||||||||||||||||||||    
T  54315316 acaatttgggacggagggagtatattttta 54315345  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 42056299 - 42056328
Alignment:
Q  1 acaatttgggacggagggagtatattttta 30  Q
    ||||||||||||||||||||||||||||||    
T  42056299 acaatttgggacggagggagtatattttta 42056328  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 39284459 - 39284487
Alignment:
Q  1 acaatttgggacggagggagtatattttt 29  Q
    |||||||||||||||||||||||||||||    
T  39284459 acaatttgggacggagggagtatattttt 39284487  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 15989849 - 15989877
Alignment:
Q  1 acaatttgggacggagggagtatattttt 29  Q
    |||||||||||||||||||||||||||||    
T  15989849 acaatttgggacggagggagtatattttt 15989877  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 17941629 - 17941601
Alignment:
Q  1 acaatttgggacggagggagtatattttt 29  Q
    |||||||||||||||||||||||||||||    
T  17941629 acaatttgggacggagggagtatattttt 17941601  T

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