View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2535_low_3 (Length: 553)
Name: NF2535_low_3
Description: NF2535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2535_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 13 - 535
Target Start/End: Original strand, 54293840 - 54294363
Alignment:
| Q |
13 |
cagagccattggatttaagcgaaaaacagtttgaattctatagtaactgcagagaatctaaacacacatttcaaatctaacaacttataccttaagcata |
112 |
Q |
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| T |
54293840 |
cagagccattggatttaagtgaaaaacagtttgaattctatagtaactgcagagaatctaaacacacatttcaaatctaacaacttataccttaagcata |
54293939 |
T |
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| Q |
113 |
ttaaaactgaaaattaaatcaaagatcagaacatattgctcctatgaatcagaatctagtcaaactaaagggcaatctttgatcccaattcatcactcaa |
212 |
Q |
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| T |
54293940 |
ttaaaactgaaaattaaatcaaagatcagaacatattgctcctatgaatcagaatctagtcaaactaaagggaaatctttgatcccaattcatcactcaa |
54294039 |
T |
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| Q |
213 |
actatcctctcaatgaacaagattgtgtcattccttccagttcatcaatcaaaagtcaaaactatcctctcaatgtataaaaccagtcgttctcaaaacc |
312 |
Q |
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| T |
54294040 |
actatcctctcaatgaacaagattgtgtcattccttccagttcatcaatcaaaagtcaaaactatcctctcaatgtataaaaccagtcgttctcaaaacc |
54294139 |
T |
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| Q |
313 |
taaaccatgtttaaggcataatataatttgggaat-nnnnnnngctccaattgacacatggaaatttgtattattaagaagtaggaaagtactctactcc |
411 |
Q |
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| T |
54294140 |
taaaccatgtttaaggcataatataatttgggaataaaaaaaagctccaattgacacatggaaatttgtattattaagaagtaggaaagtactctactcc |
54294239 |
T |
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| Q |
412 |
ctcagacatgaaatacaagcaaacatggttcctaaaaaatatctggtcttaattttaaatcacataatcaacttttcacataccacttttgcttatattt |
511 |
Q |
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| T |
54294240 |
ctcagaaatgaaatacaagcaaacatggttcctaaaaaatatctggtcttaattttaaatcacataatcaacttttcacataccacttttgcttatattt |
54294339 |
T |
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| Q |
512 |
cattccgtaataactgtgtaattg |
535 |
Q |
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| T |
54294340 |
cattccgtaataactgtgtaattg |
54294363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 17758613 - 17758669
Alignment:
| Q |
459 |
cttaattttaaatcacataatcaacttttcacataccacttttgcttatatttcatt |
515 |
Q |
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| T |
17758613 |
cttaattttaaaccacataatcaacttatcaactaccattttggcttatatttcatt |
17758669 |
T |
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