View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2535_low_4 (Length: 543)
Name: NF2535_low_4
Description: NF2535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2535_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Complemental strand, 43862088 - 43861553
Alignment:
| Q |
1 |
gagggatcataccctttcccttgttccttgcaagattgattaagaacaggtgcaactgcctcctctccttaacaaattaacaatacactaatcataatca |
100 |
Q |
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| T |
43862088 |
gagggatcataccctttcccttgttccttgcaatattgattaagaacaggtgcaactgcctcctctccttaacaaattaacaatacactaatcataatca |
43861989 |
T |
|
| Q |
101 |
acatcatcttcataaatttgatacgttagtaataattaatgataataattaagcaaagtactaatgattaattcaagagatgaatgagccaaaccttgtt |
200 |
Q |
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| T |
43861988 |
acatcatcttcataaatttgatacgttagtagtaattaatgataataattaagcaaagtactaatgattaattcaagagatgaatgagccaaaccttgtt |
43861889 |
T |
|
| Q |
201 |
tgtccttgttcgaatcagccaactttcttttatggaactccttagtctttctgcgataagccaaagcagcttcatactcggtatcatgagtaccaaggta |
300 |
Q |
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| T |
43861888 |
tgtccttgttcgaatcagctaactttcttttatggaactccttagtctttctgcgataagccaaagcagcttcatactcggtatcatgagtaccaaggta |
43861789 |
T |
|
| Q |
301 |
ctcagttgtcttttcaaatggatttctaatctgagctgcatatctttcctttttcccacggaggcgccgaacacctttgtaaatgcttgtggaaaacctt |
400 |
Q |
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| T |
43861788 |
ctcagttgtcttttcaaatggatttctaatctgagctgcatatctttccttgttcccacggaggcgccgaaaacctttgtaaatgcttgtggaaaacctt |
43861689 |
T |
|
| Q |
401 |
ctccacaatccttgtttttgaggaagctttttaactatttccggatttggttgcacaaactcacacaaaattctcttaggtggtaatggctttgagggat |
500 |
Q |
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| T |
43861688 |
ctccacaatccttgtttttgaggaagctttttaactatttctggatttggttgcacaaactcacacaaaattctcttaggtagtaatggttttgagggat |
43861589 |
T |
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| Q |
501 |
taggtttttgaacttgttcatcacttgaactctctg |
536 |
Q |
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| T |
43861588 |
taggtttttgaacttgttcatcacttgaactctctg |
43861553 |
T |
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