View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2535_low_6 (Length: 447)
Name: NF2535_low_6
Description: NF2535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2535_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 20 - 430
Target Start/End: Complemental strand, 32723673 - 32723232
Alignment:
| Q |
20 |
ttctataaatgggagcatgtggttgactaatttatctagcccaagtggacaactcatgataattccacatgaaaca--------------taatcaatcc |
105 |
Q |
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| T |
32723673 |
ttctataaatgggagcatctggttgactaatt-atctagcccaagtggacaactcatgataattccacatgaaacaatctctgtaaaacataatcaatcc |
32723575 |
T |
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| Q |
106 |
aacaaactgatttctttcttcctcaatcaacaat----ccactaatcttactcatcctagattcgtcgcggattctcaggctaactttgactaatgagta |
201 |
Q |
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| T |
32723574 |
aacaaactgatttctttcttcctcaatcaacaattaatccactaatcttactcatcctagattcgtcgcggattctcaggctaactttgactaatgagta |
32723475 |
T |
|
| Q |
202 |
atgggtcttgtgctttaacgattggtatttttctatgaattggcggttcaattacttgatcactaataccttaagttgaaaccactt------------- |
288 |
Q |
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| T |
32723474 |
atgggtcttgtgctttaacgattggtatttttctatgaattggtggttcaattacttgatcactaataccttaaattgaaaccactttctactcttattc |
32723375 |
T |
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| Q |
289 |
-tctagttcaccttcactttcatcaccttagaacataatgtctaacactcttgattcgacttccagtgtccccagtcaatccaacaagtcccttaactct |
387 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32723374 |
ttctagttcaccttcactttcatcacctaagaacataatgtctaacactcttgattcgacttccagtgtccccagtcaatccaacaagtcccttaactct |
32723275 |
T |
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| Q |
388 |
agcggtgaatattttgatttagaacctgatcaaaagttcgaag |
430 |
Q |
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| T |
32723274 |
agcggtgaatattttgatttagaacctgatcaaaagttcgaag |
32723232 |
T |
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