View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2535_low_7 (Length: 369)
Name: NF2535_low_7
Description: NF2535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2535_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 214 - 276
Target Start/End: Original strand, 32007274 - 32007336
Alignment:
| Q |
214 |
agaaccaaataaattgaactctaaatctgacagcagccaaagccaaaaccttcttttgtggct |
276 |
Q |
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| T |
32007274 |
agaaccaaataaattgaactctaaatctgacagcagccaaagccaaaaccttcttttgtggct |
32007336 |
T |
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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 32007216 - 32007248
Alignment:
| Q |
180 |
aatttatttatggcacttggaattatccatgta |
212 |
Q |
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| T |
32007216 |
aatttatttatggcacttggagttatccatgta |
32007248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 44810866 - 44810828
Alignment:
| Q |
142 |
ctctttacctctcttcatcaatcaattcagccaccaaaa |
180 |
Q |
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| T |
44810866 |
ctctttacctctcttcatcaatgaattcagccaccaaaa |
44810828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 42114131 - 42114209
Alignment:
| Q |
177 |
aaaaatttatttatggcacttggaattatccatgta----------tagaaccaaataaattgaactctaaatctgaca |
245 |
Q |
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| T |
42114131 |
aaaattttatttatggcacttggaattatccatataactgctactatagcaccaaataaattgaactctaaatctgaca |
42114209 |
T |
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