View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2535_low_8 (Length: 358)
Name: NF2535_low_8
Description: NF2535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2535_low_8 |
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| [»] scaffold0113 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 345
Target Start/End: Complemental strand, 45798917 - 45798588
Alignment:
| Q |
16 |
taacttactttggtaccaccgtcaaagcgattaggttgacatagttttgtgtagacatctttcttactcatagtggaaagattttcttcaccaagaaatt |
115 |
Q |
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| T |
45798917 |
taacttactttggtaccaccgtcaaagcgattaggttgacatagttttgtgtagacatctttcttactcatagtggaaagattttcttcaccaagaaatt |
45798818 |
T |
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| Q |
116 |
tattagcaagaaacttgtagcatgatggtaactttgattcccacacaaaatcagcagaagaagctctatgaaaagcacggttgactctagccaatttgca |
215 |
Q |
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| T |
45798817 |
tattagcaagaaacttgtagcatgatggtaactttgattcccacacaaaatcagcagaagaagctctatgaaaagcacggttgactctagccaatttgca |
45798718 |
T |
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| Q |
216 |
tatgtcatgtggatcaagatgcatgagtatggaagagatgcaactttctggaatatcaccaagaccagtttttgatgatgaagaattagactcttcatta |
315 |
Q |
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| T |
45798717 |
tatgtcatgtggatcaagatgcatgagtatggaagagatgcaactttctggaatatcaccaagaccagtttttgatgatgaagaattagactcttcatta |
45798618 |
T |
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| Q |
316 |
nnnnnnnctcttatagatgcagttgaagaa |
345 |
Q |
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| T |
45798617 |
tttttttctcttatggatgcagttgaagaa |
45798588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 10236 - 10491
Alignment:
| Q |
18 |
acttactttggtaccaccgtcaaagcgattaggttgacatagttttgtgtagacatctttcttactcatagtggaaagattttcttcaccaagaaattta |
117 |
Q |
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| T |
10236 |
acttacttttgtaccaccatcaaagaaattaggttgacataatttagcatagatctctttcttggtcatagaacaaagtttttcttcaccaagaattttc |
10335 |
T |
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| Q |
118 |
ttagcaagaaacttgtagcatgatggtaactttgattcccacacaaaatcagcagaagaagctctatgaaaagcacggttgactctagccaatttgcata |
217 |
Q |
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| T |
10336 |
ttgacaagaaacttgtagcttggaggcaacttagattcccaaacatagtcatctgaggaagctctatgaaaagttttgttgactctagccaatttacaaa |
10435 |
T |
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| Q |
218 |
tgtcatgtggatcaagatgcatgagtatggaagagatgcaactttctggaatatca |
273 |
Q |
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| T |
10436 |
tctcttgaggatccaacctcatcattatggaagatatgcagctttctggaatatca |
10491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 42591428 - 42591476
Alignment:
| Q |
151 |
gattcccacacaaaatcagcagaagaagctctatgaaaagcacggttga |
199 |
Q |
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| T |
42591428 |
gattcccaaacaaaatcagccaaagaagcaccatgaaaagcacggttga |
42591476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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