View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2536_high_5 (Length: 316)
Name: NF2536_high_5
Description: NF2536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2536_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 149 - 298
Target Start/End: Complemental strand, 7718493 - 7718344
Alignment:
| Q |
149 |
ctgtgaggagattctccaaaacataattataactcttattggccaagtgtaataataatttaataaaattatagatagatgatgagattttgatagatct |
248 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7718493 |
ctgtgaggacattctccaaaacataattataactcttattggccaagtgtaataataatttaataaaattatagatagatgatgagattttgatagatct |
7718394 |
T |
|
| Q |
249 |
tggatggcagtaagaaaaagatacaaagagagaaagtgaaaaaggtatct |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7718393 |
tggatggcagtaagaaaaagatacaaagagagaaagtgaaaaaggtatct |
7718344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 7718621 - 7718572
Alignment:
| Q |
12 |
aatactctaatgataatgattaacgaagatgcaaatagaaattttatctt |
61 |
Q |
| |
|
||||||||||| | ||||||||||||| ||| ||||| |||||||||||| |
|
|
| T |
7718621 |
aatactctaataacaatgattaacgaacatggaaatataaattttatctt |
7718572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University