View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2536_low_2 (Length: 427)
Name: NF2536_low_2
Description: NF2536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2536_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 16 - 427
Target Start/End: Original strand, 35446019 - 35446430
Alignment:
| Q |
16 |
aattagaaccaaacccagaaacgaaaacatgagaatgaagaatggttcctattttaagagcagaaagatgagcacatgctttgaaaacggaggtgaaagt |
115 |
Q |
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| T |
35446019 |
aattagaaccaaacccagaaacgaaaacatgagaatgaagaatggttcctattttaagagcagaaagatgagcacatgctttgaaaacggaggtgaaagt |
35446118 |
T |
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| Q |
116 |
gtaggaagaaggtttgtgaggggaagaaagcatacgacggtagaaaaagatagtgtcaagggagaaaccgtgctgggaagaggctttgatgagggaatta |
215 |
Q |
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| T |
35446119 |
gtaggaagaaggtttgtgaggggaagaaagcatacgacggtagaaaaagatagtgtcaagggagaaaccgtgctgggaagaggctttgatgagggaatta |
35446218 |
T |
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| Q |
216 |
aagaggaaggaatcggggtcggtgacagagaggaagagacggcgggtgtaggcgatggaaccggcggcggaggagagagtgaggagtttggtgagaaggg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35446219 |
aagaggaaggaatcggggtcggtgacagagaggaagagacggcgggtgtaggcgatggaaccggcggcggaggagagagtgaggagtttggtgaggaggg |
35446318 |
T |
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| Q |
316 |
cacgactacggtgacgaccggagacaatgagatgagcatgagcttgttggagaggtcgaatgtgtgggccagcacgtatcactgcttcgtattctacaga |
415 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35446319 |
cacgactacggtgacgacctgagacaatgagatgagcatgagcttgttggagaggtcgaatgtgtgggccagcacgtatcactgcttcgtattctacaga |
35446418 |
T |
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| Q |
416 |
ttttgatctttg |
427 |
Q |
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| T |
35446419 |
ttttgatctttg |
35446430 |
T |
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