View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2536_low_3 (Length: 401)

Name: NF2536_low_3
Description: NF2536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2536_low_3
NF2536_low_3
[»] chr3 (2 HSPs)
chr3 (1-350)||(6067564-6067913)
chr3 (306-348)||(6055975-6056017)
[»] chr5 (8 HSPs)
chr5 (52-171)||(38181058-38181178)
chr5 (52-171)||(38189953-38190073)
chr5 (52-171)||(38208282-38208402)
chr5 (52-171)||(38217178-38217298)
chr5 (52-171)||(38456418-38456538)
chr5 (52-156)||(26033073-26033178)
chr5 (145-208)||(38447662-38447725)
chr5 (215-269)||(26032886-26032940)
[»] chr1 (2 HSPs)
chr1 (145-208)||(38342966-38343029)
chr1 (145-208)||(38447159-38447222)
[»] chr4 (1 HSPs)
chr4 (267-303)||(53351151-53351187)


Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 6067913 - 6067564
Alignment:
Q  1 atgtggacgtcaacgttaggagttgcttggaagaactgataatgacatcaaaagaagatgaatttatataccacaattgaaatttagaaaatatccatag 100  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  6067913 atgtggacgtcaacgttaggagttgcctggaagaactaataatgacatcaaaggaagatgaatttatataccacaattgaaatttagaaaatatccataa 6067814  T
Q  101 attttttatgaaataaatgaaacacttttaaatgtcccaaaatagttctacaataacgtgggaagtacttctacaagcaatcatactacttcaacattga 200  Q
    ||||||||||| |||||||||||||||||| ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6067813 attttttatgagataaatgaaacacttttagatgtcccaaacatgttctacaataacgtgggaagtacttctacaagcaatcatactacttcaacattga 6067714  T
Q  201 ttgataggggtagcattggaacttctcatatacctatggatccacccccaccatgttcataccttccacgtatgatgcttggtgagtatcctcaaattac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6067713 ttgataggggtagcattggaacttctcatatacctatggatccacccccaccatgttcataccttccacgtatgatgcttggtgagtatcctcaaattac 6067614  T
Q  301 accttagatttgggaataatgctagtggtaatatttaaagaataaatgag 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6067613 accttagatttgggaataatgctagtggtaatatttaaagaataaatgag 6067564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 6055975 - 6056017
Alignment:
Q  306 agatttgggaataatgctagtggtaatatttaaagaataaatg 348  Q
    ||||||||| |||||||||||||| | ||||||||||||||||    
T  6055975 agatttgggtataatgctagtggtgaaatttaaagaataaatg 6056017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 38181058 - 38181178
Alignment:
Q  52 aagaagatgaattta-tataccacaattgaaatttagaaaatatccatagattttttatgaaataaatgaaacacttttaaatgtcccaaaatagttcta 150  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||  |||||| |||| |||||||||| ||||||| |||| |||||   ||||||    
T  38181058 aagaagatgaatttaatataccacaattgaaatttagaaaatatccatcaatttttgatgagataaatgaaaaacttttagatgttccaaacatgttcta 38181157  T
Q  151 caataacgtgggaagtacttc 171  Q
    |||||| ||||||||||||||    
T  38181158 caataatgtgggaagtacttc 38181178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 52 - 171
Target Start/End: Complemental strand, 38190073 - 38189953
Alignment:
Q  52 aagaagatgaattta-tataccacaattgaaatttagaaaatatccatagattttttatgaaataaatgaaacacttttaaatgtcccaaaatagttcta 150  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||  |||||| |||| |||||||||| ||||||| |||| |||||   ||||||    
T  38190073 aagaagatgaatttaatataccacaattgaaatttagaaaatatccatcaatttttgatgagataaatgaaaaacttttagatgttccaaacatgttcta 38189974  T
Q  151 caataacgtgggaagtacttc 171  Q
    |||||| ||||||||||||||    
T  38189973 caataatgtgggaagtacttc 38189953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 38208282 - 38208402
Alignment:
Q  52 aagaagatgaattta-tataccacaattgaaatttagaaaatatccatagattttttatgaaataaatgaaacacttttaaatgtcccaaaatagttcta 150  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||  |||||| |||| |||||||||| ||||||| |||| |||||   ||||||    
T  38208282 aagaagatgaatttaatataccacaattgaaatttagaaaatatccatcaatttttgatgagataaatgaaaaacttttagatgttccaaacatgttcta 38208381  T
Q  151 caataacgtgggaagtacttc 171  Q
    |||||| ||||||||||||||    
T  38208382 caataatgtgggaagtacttc 38208402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 52 - 171
Target Start/End: Complemental strand, 38217298 - 38217178
Alignment:
Q  52 aagaagatgaattta-tataccacaattgaaatttagaaaatatccatagattttttatgaaataaatgaaacacttttaaatgtcccaaaatagttcta 150  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||  |||||| |||| |||||||||| ||||||| |||| |||||   ||||||    
T  38217298 aagaagatgaatttaatataccacaattgaaatttagaaaatatccatcaatttttgatgagataaatgaaaaacttttagatgttccaaacatgttcta 38217199  T
Q  151 caataacgtgggaagtacttc 171  Q
    |||||| ||||||||||||||    
T  38217198 caataatgtgggaagtacttc 38217178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 38456418 - 38456538
Alignment:
Q  52 aagaagatgaattta-tataccacaattgaaatttagaaaatatccatagattttttatgaaataaatgaaacacttttaaatgtcccaaaatagttcta 150  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||  |||||| |||| |||||||||| ||||||| |||| |||||   ||||||    
T  38456418 aagaagatgaatttaatataccacaattgaaatttagaaaatatccatcaatttttgatgagataaatgaaaaacttttagatgttccaaacatgttcta 38456517  T
Q  151 caataacgtgggaagtacttc 171  Q
    |||||| ||||||||||||||    
T  38456518 caataatgtgggaagtacttc 38456538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 52 - 156
Target Start/End: Complemental strand, 26033178 - 26033073
Alignment:
Q  52 aagaagatgaattt-atataccacaattgaaatttagaaaatatccatagattttttatgaaataaatgaaacacttttaaatgtcccaaaatagttcta 150  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||  |||||| |||| |||||||||| ||||||| ||||||||||   ||||||    
T  26033178 aagaagatgaatttcatataccacaattgaaatttagaaaatatccatcaatttttgatgagataaatgaaaaacttttagatgtcccaaacatgttcta 26033079  T
Q  151 caataa 156  Q
    ||||||    
T  26033078 caataa 26033073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 38447662 - 38447725
Alignment:
Q  145 gttctacaataacgtgggaagtacttctacaagcaatcatactacttcaacattgattgatagg 208  Q
    |||||||||||| |||||||||||||||||||||||||||||||| || | |||||||||||||    
T  38447662 gttctacaataatgtgggaagtacttctacaagcaatcatactacctcgagattgattgatagg 38447725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 26032940 - 26032886
Alignment:
Q  215 attggaacttctcatatacctatggatccacccccaccatgttcataccttccac 269  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  26032940 attggaacttcttatatacctatggctccacccccaccatgttcataccttccac 26032886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 38342966 - 38343029
Alignment:
Q  145 gttctacaataacgtgggaagtacttctacaagcaatcatactacttcaacattgattgatagg 208  Q
    ||||| |||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  38342966 gttcttcaataatgtgggaagtacttctacatgcaatcatactacttctacattgattgatagg 38343029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 38447159 - 38447222
Alignment:
Q  145 gttctacaataacgtgggaagtacttctacaagcaatcatactacttcaacattgattgatagg 208  Q
    ||||| |||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  38447159 gttcttcaataatgtgggaagtacttctacatgcaatcatactacttctacattgattgatagg 38447222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 53351187 - 53351151
Alignment:
Q  267 cacgtatgatgcttggtgagtatcctcaaattacacc 303  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  53351187 cacgtaagatgcttggtgagtatcctcaaattccacc 53351151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University