View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2536_low_6 (Length: 278)
Name: NF2536_low_6
Description: NF2536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2536_low_6 |
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| [»] scaffold0188 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 50981479 - 50981217
Alignment:
| Q |
1 |
gttacctatagattcttcaattactcatctggttttattcatcacactactataaggaatttggagtacaacactaaatattattatgaggttggacttg |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50981479 |
gttacttatagattcttcaattactcatctggttttattcatcacactactataaggaatttggagtacaacactaaatattattatgaggttggacttg |
50981380 |
T |
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| Q |
101 |
ggaacacaacaagacagttttggtttataactcctcctgaaattggtcctgatgtgccatacacatttggtctcataggagatctcggtcagagctttga |
200 |
Q |
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| T |
50981379 |
ggaacacaacaagacagttttggtttataactcctcctgaaattggtcctgatgtgccatacacatttggtctcataggagatctcggtcagagctttga |
50981280 |
T |
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| Q |
201 |
ttcaaacagaacactttctcactatgaattgaatcctagaaaggggcaaacagtgttgtttgt |
263 |
Q |
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| T |
50981279 |
ttcaaacagaacactttctcactatgaattgaatcctagaaaggggcaaacagtgttgtttgt |
50981217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 9292 - 9406
Alignment:
| Q |
65 |
agtacaacactaaatattattatgaggttggacttgggaacacaacaagacagttttggtttataactcctcctgaaattggtcctgatgtgccatacac |
164 |
Q |
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| T |
9292 |
agtacaataccaaatattattatgaggttggacttaggaacacaacaaggcagttttggtttacaactcctcctgcaattggtcctgatgtgccatacac |
9391 |
T |
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| Q |
165 |
atttggtctcatagg |
179 |
Q |
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| T |
9392 |
atttggtctcatagg |
9406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 9146 - 9202
Alignment:
| Q |
7 |
tatagattcttcaattactcatctggttttattcatcacactactataaggaatttg |
63 |
Q |
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| T |
9146 |
tatagatacttcaattactcatctggttttattcatcatgttactataaggaatttg |
9202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 10009 - 10053
Alignment:
| Q |
181 |
gatctcggtcagagctttgattcaaacagaacactttctcactat |
225 |
Q |
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| T |
10009 |
gatcttggtcagacttttgattcaaacaggacactttctcactat |
10053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 13638142 - 13638256
Alignment:
| Q |
65 |
agtacaacactaaatattattatgaggttggacttgggaacacaacaagacagttttggtttataactcctcctgaaattggtcctgatgtgccatacac |
164 |
Q |
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||||||| || ||||||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
13638142 |
agtacaataccaaatattattacgaggttggactcgggaacacaacaaggcagttttggtttacaactcctcctgaaatcggtcctgatgtgccatacac |
13638241 |
T |
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| Q |
165 |
atttggtctcatagg |
179 |
Q |
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||||||||| ||||| |
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| T |
13638242 |
atttggtctaatagg |
13638256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 13638687 - 13638769
Alignment:
| Q |
181 |
gatctcggtcagagctttgattcaaacagaacactttctcactatgaattgaatcctagaaaggggcaaacagtgttgtttgt |
263 |
Q |
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||||| |||||||||| ||||||||||| |||||||||||||| |||||||| || | ||| || ||||||||||||||||| |
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| T |
13638687 |
gatcttggtcagagctatgattcaaacaagacactttctcactacgaattgaacccaacaaaaggacaaacagtgttgtttgt |
13638769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 13637968 - 13638029
Alignment:
| Q |
1 |
gttacctatagattcttcaattactcatctggttttattcatcacactactataaggaattt |
62 |
Q |
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||||| |||||||| ||||||||| | ||||||||||| |||||||||||||| |||||||| |
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| T |
13637968 |
gttacttatagatttttcaattacacttctggttttatccatcacactactattaggaattt |
13638029 |
T |
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