View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2536_low_7 (Length: 251)
Name: NF2536_low_7
Description: NF2536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2536_low_7 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 34459930 - 34460175
Alignment:
| Q |
11 |
agcataggataaatgaattaattaattttgatagattatt--taaattaaacacgaaagttcaacttaacaaaaaagaaatactactcttgtnnnnnnnn |
108 |
Q |
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| T |
34459930 |
agcaaaggataaatgaattaatta----tgatagattattattaaattaaacacgaaagttcaacttaacaaaaaagaaatactactcttgtaaaaaaaa |
34460025 |
T |
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| Q |
109 |
n-------tacttgtattgtagtaccttatgtgtggatatatcgtccgtgagtctaccaaaaattgacacagcatcgatgattgttgggtagtttaaaat |
201 |
Q |
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| T |
34460026 |
taaaaaaatacttgtactgtagtaccttatttgtggatatatcgtccgtgagtctaccaaaaattgacacagcatcgatgattgttgggtagtttaaaat |
34460125 |
T |
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| Q |
202 |
ccaattaactaactcttcgtttgaaaattctccaaacacaagaaaagtta |
251 |
Q |
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| T |
34460126 |
ccaattaactaactcttcgtttgaaagttctccaaacacaagaaaagtta |
34460175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 236
Target Start/End: Original strand, 34448720 - 34448834
Alignment:
| Q |
122 |
agtaccttatgtgtggatatatcgtccgtgagtctaccaaaaattgacacagcatcgatgattgttgggtagtttaaaatccaattaactaactcttcgt |
221 |
Q |
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| T |
34448720 |
agtaccttatgtgaggatatgtcatccgcgagtctaccatgagccgatatagcatcgatgattgttggatagttgaaaatccaatcgagaatctcgtcgt |
34448819 |
T |
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| Q |
222 |
ttgaaaattctccaa |
236 |
Q |
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| T |
34448820 |
ttgaaaattctccaa |
34448834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 6131371 - 6131306
Alignment:
| Q |
171 |
cagcatcgatgattgttgggtagtttaaaatccaattaactaactcttcgtttgaaaattctccaa |
236 |
Q |
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| T |
6131371 |
cagcattgatgattgttgggtcgctgaaaatccaatcaagtaactctttgtttgaaaattctccaa |
6131306 |
T |
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