View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2537_high_3 (Length: 359)
Name: NF2537_high_3
Description: NF2537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2537_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 10969184 - 10968852
Alignment:
| Q |
19 |
cttcactaacacttacatagcttggtgaggtaaaaacagtggctgcatagatttcatcacaaactaaatggattgttttctcattgatgaaggttataag |
118 |
Q |
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| T |
10969184 |
cttcactaacacttacatagcttggtgaggtaaaaacagtggctgcatagatttcatcacaaactaaatggattgttttctcattgatgaaggttataag |
10969085 |
T |
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| Q |
119 |
actctttagtgtctctttgtctaaggttgttcctaatgggttggaggggtttgttatgatcaacccttttacattgatgttgttttcttgtgctttgttg |
218 |
Q |
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| T |
10969084 |
actctttagtgtctctttgtctaaggttgttcctaatgggttggaggggtttgttatgatcaacccttttacattgatgttgttttcttgtgcttttttg |
10968985 |
T |
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| Q |
219 |
tatgctacttcaagtgcttctcttgttattttgaagttgttggagctatcacaatggacaggaattaattgaacctttgttctccaacacaagtcacgga |
318 |
Q |
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| T |
10968984 |
tatgctacttcaagtgcttctcttgttattttgaagttgttggagctatcacaatggacaggaattaattgaacctttgttctccaacacaagtcacgaa |
10968885 |
T |
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| Q |
319 |
agaatctgtaataaaatatgaattaggttcatc |
351 |
Q |
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| T |
10968884 |
cgaatctgtagtaaaatatgaattaggttcatc |
10968852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 120 - 328
Target Start/End: Original strand, 29964129 - 29964337
Alignment:
| Q |
120 |
ctctttagtgtctctttgtctaaggttgttcctaatgggttggaggggtttgttatgatcaacccttttacattgatgttgttttcttgtgctttgttgt |
219 |
Q |
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| T |
29964129 |
ctctttagtgtatctttttctaatgttgttcctaaaggatttgatggatttgttatgattaacccttttacattgatgttttcttcttgtgcttttttat |
29964228 |
T |
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| Q |
220 |
atgctacttcaagtgcttctcttgttattttgaagttgttggagctatcacaatggacaggaattaattgaacctttgttctccaacacaagtcacggaa |
319 |
Q |
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||| |||||||||||||||||||||| ||||| ||||| ||||||| ||| ||||||||||||| ||| || ||||||||||| |||||||||| |
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| T |
29964229 |
gagcttcttcaagtgcttctcttgttatcttgaaattgtttgagctatgacattggacaggaattagttgcacaccggttctccaacataagtcacggac |
29964328 |
T |
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| Q |
320 |
gaatctgta |
328 |
Q |
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|||||||| |
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| T |
29964329 |
aaatctgta |
29964337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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