View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2537_low_1 (Length: 901)

Name: NF2537_low_1
Description: NF2537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2537_low_1
NF2537_low_1
[»] chr6 (18 HSPs)
chr6 (333-884)||(33392678-33393231)
chr6 (136-246)||(33393318-33393430)
chr6 (351-399)||(6068629-6068677)
chr6 (351-399)||(7596996-7597044)
chr6 (351-399)||(33052813-33052861)
chr6 (10-59)||(33393507-33393553)
chr6 (362-407)||(6565381-6565426)
chr6 (351-399)||(2830398-2830446)
chr6 (351-399)||(6330178-6330226)
chr6 (351-399)||(8099593-8099641)
chr6 (351-399)||(8382988-8383036)
chr6 (351-399)||(8417812-8417860)
chr6 (351-399)||(9644759-9644807)
chr6 (351-399)||(9650776-9650824)
chr6 (351-399)||(11572164-11572212)
chr6 (351-399)||(13853612-13853660)
chr6 (351-399)||(26602386-26602434)
chr6 (362-399)||(14236697-14236734)
[»] chr8 (14 HSPs)
chr8 (350-404)||(8587232-8587286)
chr8 (351-399)||(44498206-44498254)
chr8 (362-405)||(17006985-17007028)
chr8 (362-405)||(17570219-17570262)
chr8 (351-408)||(15888362-15888419)
chr8 (351-399)||(54631-54679)
chr8 (351-399)||(2890181-2890229)
chr8 (351-399)||(6552718-6552766)
chr8 (351-399)||(7785797-7785845)
chr8 (351-399)||(13578920-13578968)
chr8 (351-399)||(33289280-33289328)
chr8 (351-399)||(39571222-39571270)
chr8 (350-399)||(24216119-24216168)
chr8 (350-399)||(35564709-35564758)
[»] chr7 (14 HSPs)
chr7 (350-399)||(4790310-4790359)
chr7 (665-717)||(12311859-12311911)
chr7 (351-399)||(94337-94385)
chr7 (351-399)||(1565748-1565796)
chr7 (351-399)||(1738466-1738514)
chr7 (351-399)||(7240812-7240860)
chr7 (351-399)||(7482288-7482336)
chr7 (351-399)||(9268819-9268867)
chr7 (351-399)||(28536770-28536818)
chr7 (351-399)||(31319418-31319466)
chr7 (351-399)||(36583458-36583506)
chr7 (351-399)||(38063932-38063980)
chr7 (351-399)||(38441523-38441571)
chr7 (351-399)||(46840923-46840971)
[»] chr5 (11 HSPs)
chr5 (351-399)||(37642017-37642065)
chr5 (350-403)||(3346908-3346961)
chr5 (350-399)||(6126886-6126935)
chr5 (351-399)||(9395413-9395461)
chr5 (351-399)||(11795231-11795279)
chr5 (351-399)||(17025687-17025735)
chr5 (351-399)||(23360005-23360053)
chr5 (351-399)||(26350369-26350417)
chr5 (351-399)||(36563557-36563605)
chr5 (351-399)||(41989426-41989474)
chr5 (350-399)||(36189754-36189803)
[»] chr4 (6 HSPs)
chr4 (351-399)||(53337433-53337481)
chr4 (351-404)||(3993039-3993092)
chr4 (351-399)||(3422123-3422171)
chr4 (351-399)||(6121912-6121960)
chr4 (351-399)||(7579373-7579421)
chr4 (351-399)||(47833674-47833722)
[»] chr3 (16 HSPs)
chr3 (351-399)||(8437488-8437536)
chr3 (351-399)||(8817405-8817453)
chr3 (351-399)||(9111513-9111561)
chr3 (351-399)||(10298042-10298090)
chr3 (351-399)||(17653775-17653823)
chr3 (351-399)||(19557071-19557119)
chr3 (351-399)||(22721994-22722042)
chr3 (351-399)||(33942951-33942999)
chr3 (351-399)||(37508984-37509032)
chr3 (351-399)||(40691015-40691063)
chr3 (351-399)||(42507374-42507422)
chr3 (351-399)||(44785415-44785463)
chr3 (351-399)||(48340460-48340508)
chr3 (349-405)||(48729601-48729656)
chr3 (351-399)||(49823400-49823448)
chr3 (362-403)||(14848272-14848313)
[»] chr2 (16 HSPs)
chr2 (344-396)||(36089499-36089551)
chr2 (351-399)||(41492915-41492963)
chr2 (344-406)||(15243987-15244049)
chr2 (351-399)||(3055621-3055669)
chr2 (351-399)||(6648538-6648586)
chr2 (351-399)||(9047774-9047822)
chr2 (351-399)||(12337956-12338004)
chr2 (351-399)||(13197729-13197777)
chr2 (351-399)||(15896905-15896953)
chr2 (351-399)||(16243802-16243850)
chr2 (351-399)||(37990032-37990080)
chr2 (351-399)||(38917541-38917589)
chr2 (351-399)||(41478658-41478706)
chr2 (351-399)||(44397610-44397658)
chr2 (351-399)||(44398749-44398797)
chr2 (351-404)||(12170413-12170466)
[»] chr1 (18 HSPs)
chr1 (350-407)||(28017932-28017989)
chr1 (351-399)||(9981710-9981758)
chr1 (351-399)||(11795996-11796044)
chr1 (351-399)||(14984900-14984948)
chr1 (351-399)||(17556816-17556864)
chr1 (351-399)||(25694382-25694430)
chr1 (351-399)||(27159377-27159425)
chr1 (351-399)||(31842814-31842862)
chr1 (351-399)||(34042759-34042807)
chr1 (351-399)||(39401985-39402033)
chr1 (351-399)||(44668112-44668160)
chr1 (351-399)||(47216718-47216766)
chr1 (351-407)||(47588348-47588404)
chr1 (351-399)||(47777500-47777548)
chr1 (333-404)||(21537914-21537985)
chr1 (351-398)||(23278021-23278068)
chr1 (364-402)||(5392222-5392260)
chr1 (362-399)||(44953082-44953119)
[»] scaffold1707 (1 HSPs)
scaffold1707 (351-399)||(1398-1446)


Alignment Details
Target: chr6 (Bit Score: 472; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 333 - 884
Target Start/End: Complemental strand, 33393231 - 33392678
Alignment:
Q  333 gttgatgtaattgattaaaattttaaactagatacatcaacttttattgactcaaatttctcttatatataaaactaaaggagtataatttttgtctatt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33393231 gttgatgtaattgattaaaattttaaactagatacatcaacttttattgactcaaatttctcttatatataaaattaaaggagtataatttttgtctatt 33393132  T
Q  433 acgaggattaaattggaaaacaaaaggtataggagcacccttctatcttttatcgacatcaatgtgggtgggagagagtcgtttaatacgagctccctat 532  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  33393131 acgaggattaaattggaaaacaaaaggtataggagcacccttctatcttttatccacatcaatgtggatgggagagagtcgtttaatacgagctccctat 33393032  T
Q  533 ttttatcacacacattattatctggtcgacatttaaaccctatcagacagagttttctctagaaattagagttaacatnnnnnnnnntgtgttcttacta 632  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||    
T  33393031 ttttatcacacacattattatctggtcgacatttaaaccctatcagacagagttttctctagaaattagagttaacataaaaaaaaatgtgttcttacta 33392932  T
Q  633 atttaaatggttcttagaaatttaaagatcgtggaattggttggctatggaatatatgcaaaaaccataagaaattgaagcttctaaacatgccaagaaa 732  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33392931 atttaaatggttcttagaaatttaaagatcgtggaattggttggctatggaatatatgcaaaaaccataagaaattgaagcttctaaacatgccaagaaa 33392832  T
Q  733 tcagtggttcttactaatttaaatgtttgaagctgttcagcaaattgagctataattatttt--nnnnnnnntcagctttaatattgatggtgtatgtgt 830  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||          ||||||||||||||||||||||||||||    
T  33392831 tcagtggttcttactaatttaaatgtttgaagctgttcagcaaattgaactataattatttttaaaaaaaaatcagctttaatattgatggtgtatgtgt 33392732  T
Q  831 ctatggaaatttgcataaattcttgattttctattacctatggtccttacaatt 884  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33392731 ccatggaaatttgcataaattcttgattttctattacctatggtccttacaatt 33392678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 136 - 246
Target Start/End: Complemental strand, 33393430 - 33393318
Alignment:
Q  136 ctatcagagcaatgctatat--gtcccgaattattcttcgggaaatatcacgagcgtgtatttgtgacttcaagtaaaaagaaaaagagcatagttttat 233  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33393430 ctatcagagcaatgctatatatgtcccgaattattcttcgggaaatatcacgagcgtgtatttgtgacttcaagtaaaaagaaaaagagcatagttttat 33393331  T
Q  234 attttgaatagac 246  Q
    |||||||||||||    
T  33393330 attttgaatagac 33393318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 6068629 - 6068677
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| |||||||||| ||||||||||    
T  6068629 aatttttaactagatacatcaacttttgttgactcaaaattctcttata 6068677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 7597044 - 7596996
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| ||||| ||||||||||||||||||||||||||||||| ||||    
T  7597044 aatttttaactaaatacatcaacttttattgactcaaatttctcctata 7596996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 33052861 - 33052813
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||||||||| |||| ||||||||||    
T  33052861 aatttttaactagatacatcaacttttattgacccaaaattctcttata 33052813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 33393553 - 33393507
Alignment:
Q  10 catcatcacgtggtttcgtttttgttatgtttaattatagtgttttgttg 59  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||    
T  33393553 catcatcacgtggtttcgttttt---atgtttaattatagtgttttgttg 33393507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 6565381 - 6565426
Alignment:
Q  362 agatacatcaacttttattgactcaaatttctcttatatataaaac 407  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||||    
T  6565381 agatacattaacttttatttactcaaatttctcttgtatataaaac 6565426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 2830398 - 2830446
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  2830398 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 2830446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 6330178 - 6330226
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  6330178 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 6330226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 8099593 - 8099641
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  8099593 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 8099641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 8383036 - 8382988
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  8383036 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 8382988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 8417860 - 8417812
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  8417860 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 8417812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 9644759 - 9644807
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  9644759 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 9644807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 9650776 - 9650824
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  9650776 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 9650824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 11572212 - 11572164
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  11572212 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 11572164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 13853660 - 13853612
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  13853660 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 13853612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 26602386 - 26602434
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  26602386 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 26602434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 399
Target Start/End: Original strand, 14236697 - 14236734
Alignment:
Q  362 agatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  14236697 agatacatcaacttttgttgactcaactttctcttata 14236734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 350 - 404
Target Start/End: Original strand, 8587232 - 8587286
Alignment:
Q  350 aaattttaaactagatacatcaacttttattgactcaaatttctcttatatataa 404  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||    
T  8587232 aaatttttaactagatacatcaacttttattgactcaagtttctcttataaataa 8587286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 44498254 - 44498206
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||||||||| |||| ||||||||||    
T  44498254 aatttttaactagatacatcaacttttattgacccaaaattctcttata 44498206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 362 - 405
Target Start/End: Original strand, 17006985 - 17007028
Alignment:
Q  362 agatacatcaacttttattgactcaaatttctcttatatataaa 405  Q
    ||||||||||||||||||||||| |||||||||||||| |||||    
T  17006985 agatacatcaacttttattgactaaaatttctcttataaataaa 17007028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 362 - 405
Target Start/End: Complemental strand, 17570262 - 17570219
Alignment:
Q  362 agatacatcaacttttattgactcaaatttctcttatatataaa 405  Q
    ||||||||||||||||||||||| |||||||||||||| |||||    
T  17570262 agatacatcaacttttattgactaaaatttctcttataaataaa 17570219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 15888419 - 15888362
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttatatataaaact 408  Q
    |||||| |||||||||||||||||||| ||||| |||| |||||||||| ||| ||||    
T  15888419 aatttttaactagatacatcaacttttgttgacccaaaattctcttataaatagaact 15888362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 54679 - 54631
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  54679 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 54631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 2890229 - 2890181
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  2890229 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 2890181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 6552718 - 6552766
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  6552718 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 6552766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 7785845 - 7785797
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  7785845 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 7785797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 13578920 - 13578968
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  13578920 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 13578968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 33289328 - 33289280
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  33289328 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 33289280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 39571270 - 39571222
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  39571270 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 39571222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 399
Target Start/End: Complemental strand, 24216168 - 24216119
Alignment:
Q  350 aaattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    ||||||||||  |||||||||||||||| ||||||||| || ||||||||    
T  24216168 aaattttaaatcagatacatcaacttttgttgactcaatttcctcttata 24216119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 399
Target Start/End: Complemental strand, 35564758 - 35564709
Alignment:
Q  350 aaattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    ||||||| ||||||||||||||| |||| ||||||||||  |||||||||    
T  35564758 aaattttgaactagatacatcaaattttgttgactcaaaaatctcttata 35564709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 350 - 399
Target Start/End: Original strand, 4790310 - 4790359
Alignment:
Q  350 aaattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    ||||||| |||||||||||||||||||||||||| |||| ||||||||||    
T  4790310 aaatttttaactagatacatcaacttttattgacccaaaattctcttata 4790359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 665 - 717
Target Start/End: Original strand, 12311859 - 12311911
Alignment:
Q  665 ggaattggttggctatggaatatatgcaaaaaccataagaaattgaagcttct 717  Q
    |||||||||||||||||||| | ||||| ||||| ||||||||||||||||||    
T  12311859 ggaattggttggctatggaagagatgcagaaaccttaagaaattgaagcttct 12311911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 94385 - 94337
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  94385 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 94337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 1565796 - 1565748
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  1565796 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 1565748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 1738514 - 1738466
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  1738514 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 1738466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 7240812 - 7240860
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  7240812 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 7240860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 7482288 - 7482336
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  7482288 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 7482336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 9268819 - 9268867
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  9268819 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 9268867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 28536818 - 28536770
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||||||||  |||| ||||||||||    
T  28536818 aatttttaactagatacatcaacttttattgatccaaaattctcttata 28536770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 31319466 - 31319418
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  31319466 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 31319418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 36583458 - 36583506
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  36583458 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 36583506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 38063980 - 38063932
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  38063980 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 38063932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 38441523 - 38441571
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  38441523 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 38441571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 46840923 - 46840971
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  46840923 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 46840971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 37642017 - 37642065
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||||||||| |||| ||||||||||    
T  37642017 aatttttaactagatacatcaacttttattgacccaaaattctcttata 37642065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 403
Target Start/End: Complemental strand, 3346961 - 3346908
Alignment:
Q  350 aaattttaaactagatacatcaacttttattgactcaaatttctcttatatata 403  Q
    |||||||||||||| ||||||||||||| |||||  || |||||||||||||||    
T  3346961 aaattttaaactaggtacatcaacttttgttgacgaaactttctcttatatata 3346908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 399
Target Start/End: Original strand, 6126886 - 6126935
Alignment:
Q  350 aaattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    ||||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  6126886 aaatttttaactagatacatcaacttttgttgacccaaaattctcttata 6126935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 9395413 - 9395461
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  9395413 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 9395461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 11795231 - 11795279
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  11795231 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 11795279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 17025687 - 17025735
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  17025687 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 17025735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 23360005 - 23360053
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  23360005 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 23360053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 26350417 - 26350369
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| ||||||||||||||||||||||||| ||||| |||| |||||    
T  26350417 aatttttaactagatacatcaacttttattgattcaaaattcttttata 26350369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 36563605 - 36563557
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  36563605 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 36563557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 41989474 - 41989426
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  41989474 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 41989426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 399
Target Start/End: Original strand, 36189754 - 36189803
Alignment:
Q  350 aaattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    ||||||||||| |||| ||| ||||||||||||||||||| | |||||||    
T  36189754 aaattttaaacgagatgcatgaacttttattgactcaaatgtatcttata 36189803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 53337433 - 53337481
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||||||||| |||| ||||||||||    
T  53337433 aatttttaactagatacatcaacttttattgacccaaaattctcttata 53337481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 3993039 - 3993092
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttatatataa 404  Q
    |||||| |||||||||||||||||||| ||||| |||| |||||||||| ||||    
T  3993039 aatttttaactagatacatcaacttttgttgacccaaaattctcttataaataa 3993092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 3422123 - 3422171
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  3422123 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 3422171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 6121960 - 6121912
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  6121960 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 6121912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 7579373 - 7579421
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  7579373 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 7579421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 47833674 - 47833722
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  47833674 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 47833722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 8437488 - 8437536
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| |||||||||| ||||||||||    
T  8437488 aatttttaactagatacatcaacttttgttgactcaaaattctcttata 8437536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 8817453 - 8817405
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  8817453 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 8817405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 9111561 - 9111513
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  9111561 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 9111513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 10298042 - 10298090
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  10298042 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 10298090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 17653775 - 17653823
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  17653775 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 17653823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 19557119 - 19557071
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  19557119 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 19557071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 22721994 - 22722042
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  22721994 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 22722042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 33942999 - 33942951
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| ||| |||||||||||    
T  33942999 aatttttaactagatacatcaacttttgttgacccaagtttctcttata 33942951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 37508984 - 37509032
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  37508984 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 37509032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 40691063 - 40691015
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  40691063 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 40691015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 42507422 - 42507374
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  42507422 aattttgaactagatacatcaacttttgttgacccaaaattctcttata 42507374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 44785463 - 44785415
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  44785463 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 44785415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 48340460 - 48340508
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  48340460 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 48340508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 48729601 - 48729656
Alignment:
Q  349 aaaattttaaactagatacatcaacttttattgactcaaatttctcttatatataaa 405  Q
    |||||||||| | ||||||||||||||||||| |||||||| ||||||||| |||||    
T  48729601 aaaattttaatc-agatacatcaacttttattaactcaaatgtctcttataaataaa 48729656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 49823448 - 49823400
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  49823448 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 49823400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 403
Target Start/End: Complemental strand, 14848313 - 14848272
Alignment:
Q  362 agatacatcaacttttattgactcaaatttctcttatatata 403  Q
    |||||||||||||||| ||||| ||| |||||||||||||||    
T  14848313 agatacatcaacttttgttgacccaattttctcttatatata 14848272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 36089499 - 36089551
Alignment:
Q  344 tgattaaaattttaaactagatacatcaacttttattgactcaaatttctctt 396  Q
    ||||| ||| ||||||||||||||||||||||||||| |||||||| ||||||    
T  36089499 tgattcaaaatttaaactagatacatcaacttttattaactcaaatatctctt 36089551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 41492963 - 41492915
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  41492963 aatttttaactagatacatcaacttttgttgacccaaatttctcttata 41492915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 15244049 - 15243987
Alignment:
Q  344 tgattaaaattttaaactagatacatcaacttttattgactcaaatttctcttatatataaaa 406  Q
    ||||| ||| |||| ||||||||||||||||||| |||| |||||| ||||||||| ||||||    
T  15244049 tgattcaaaatttagactagatacatcaacttttgttgattcaaatatctcttataaataaaa 15243987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 3055621 - 3055669
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  3055621 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 3055669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 6648586 - 6648538
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  6648586 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 6648538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 9047822 - 9047774
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  9047822 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 9047774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 12338004 - 12337956
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  12338004 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 12337956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 13197777 - 13197729
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  13197777 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 13197729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 15896905 - 15896953
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  15896905 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 15896953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 16243850 - 16243802
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  16243850 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 16243802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 37990080 - 37990032
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  37990080 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 37990032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 38917589 - 38917541
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  38917589 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 38917541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 41478706 - 41478658
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  41478706 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 41478658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 44397610 - 44397658
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  44397610 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 44397658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 44398749 - 44398797
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  44398749 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 44398797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 12170466 - 12170413
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttatatataa 404  Q
    |||||| ||||| |||||||||||||| ||||| ||| ||||||||||| ||||    
T  12170466 aatttttaactaaatacatcaacttttgttgacccaagtttctcttataaataa 12170413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 407
Target Start/End: Complemental strand, 28017989 - 28017932
Alignment:
Q  350 aaattttaaactagatacatcaacttttattgactcaaatttctcttatatataaaac 407  Q
    ||||||||||||| |||||| || ||||||||| |||||| ||||||||| |||||||    
T  28017989 aaattttaaactaaatacattaatttttattgattcaaatatctcttataaataaaac 28017932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 9981710 - 9981758
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  9981710 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 9981758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 11795996 - 11796044
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  11795996 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 11796044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 14984900 - 14984948
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  14984900 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 14984948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 17556816 - 17556864
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| ||| |||||||||||    
T  17556816 aatttttaactagatacatcaacttttgttgacccaagtttctcttata 17556864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 25694382 - 25694430
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  25694382 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 25694430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 27159425 - 27159377
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  27159425 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 27159377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 31842862 - 31842814
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  31842862 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 31842814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 34042759 - 34042807
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  34042759 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 34042807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 39402033 - 39401985
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  39402033 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 39401985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 44668160 - 44668112
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  44668160 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 44668112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 47216766 - 47216718
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  47216766 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 47216718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 47588404 - 47588348
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttatatataaaac 407  Q
    |||||| || ||||||||||||||||| ||||| |||| |||||||||| |||||||    
T  47588404 aatttttaattagatacatcaacttttgttgacccaaaattctcttataaataaaac 47588348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 47777548 - 47777500
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  47777548 aattttgaactagatacatcaacttttgttgacccaaaattctcttata 47777500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 333 - 404
Target Start/End: Original strand, 21537914 - 21537985
Alignment:
Q  333 gttgatgtaattgattaaaattttaaactagatacatcaacttttattgactcaaatttctcttatatataa 404  Q
    |||||||||  ||||| ||||||||    |||||||||||||||| ||||||||| ||||||||||| ||||    
T  21537914 gttgatgtatctgattcaaattttagttcagatacatcaacttttgttgactcaattttctcttataaataa 21537985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 398
Target Start/End: Complemental strand, 23278068 - 23278021
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttat 398  Q
    |||||| |||||||||||||||||||| ||||| |||| |||||||||    
T  23278068 aatttttaactagatacatcaacttttgttgacccaaaattctcttat 23278021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 5392222 - 5392260
Alignment:
Q  364 atacatcaacttttattgactcaaatttctcttatatat 402  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  5392222 atacatcaacttttattgacctaaatttctcttatatat 5392260  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 399
Target Start/End: Complemental strand, 44953119 - 44953082
Alignment:
Q  362 agatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||||||||||||||||||||||||| | |||||||    
T  44953119 agatacatcaacttttattgactcaaatgtttcttata 44953082  T

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Target: scaffold1707 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold1707
Description:

Target: scaffold1707; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 1398 - 1446
Alignment:
Q  351 aattttaaactagatacatcaacttttattgactcaaatttctcttata 399  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||||||||    
T  1398 aatttttaactagatacatcaacttttgttgacccaaaattctcttata 1446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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