View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2537_low_3 (Length: 392)
Name: NF2537_low_3
Description: NF2537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2537_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 46642280 - 46642638
Alignment:
| Q |
18 |
cttttaataggaacagctgcatgattagaatcaccggatattactctctgattgaattcatgttttatgatcctcttcattcgattatcaccaaacacag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642280 |
cttttaataggaacagctgcatgattagaatcaccggatattactctctgattgaattcatgttttatgatcctcttcattcgattatcaccaaacacag |
46642379 |
T |
|
| Q |
118 |
aagtgtgttgatttttctggctttcaaccatcttgtttggatcactatcagttttgttaattttctgtttaccacatagcaccatcttagcttccaccat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642380 |
aagtgtgttgatttttctggctttcaaccatcttgtttggatcactatcagttttgttaattttctgtttaccacatagcaccatcttagcttccaccat |
46642479 |
T |
|
| Q |
218 |
tcttcgtgaatcatcagttgaacagacgcctttactttctttcagaagattcgtagtcatcctagaagcatctcccaattcaaccgactgatattttggt |
317 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
46642480 |
tcttcgtgaatcatcagttgaagagacgcctttactttctttcagaagattcgtagtcatcctagaagcatctcccaattcaaccgacggatattttggt |
46642579 |
T |
|
| Q |
318 |
tgtttcattttcttcaatagttttccttcggaaagtctattggtatcaatgaccgtcaa |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642580 |
tgtttcattttcttcaatagttttccttcggaaagtctattggtatcaatgaccgtcaa |
46642638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 46638518 - 46638433
Alignment:
| Q |
20 |
tttaataggaacagctgcatgattagaatcaccggatattactctctgattgaattcatgttttatgatcctcttcattcgattat |
105 |
Q |
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| T |
46638518 |
tttaataggaacggctgcatgattagaatcacctgaccttactctctgattgaattgatgttttatgatcctcgtcaatcgattat |
46638433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 46619800 - 46619717
Alignment:
| Q |
20 |
tttaataggaacagctgcatgattagaatcaccggatattactctctgattgaattcatgttttatgatcctcttcattcgatt |
103 |
Q |
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|||||||||||| |||||||||||||||||||| ||| |||||||| ||||||||| |||||||||||||||| ||| |||||| |
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| T |
46619800 |
tttaataggaacggctgcatgattagaatcaccagatcttactctccgattgaattgatgttttatgatcctcgtcaatcgatt |
46619717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 202 - 367
Target Start/End: Complemental strand, 46638333 - 46638165
Alignment:
| Q |
202 |
tcttagcttccaccattcttcgtgaatcatcagttgaacagacgcctttactttctttcagaagattcgtagtcatcctagaagcatctcccaattcaac |
301 |
Q |
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| T |
46638333 |
tcttagcttccaccttccttggtgaatcatcaattgaagagccacccttactttctctcagaagactagtagtcatcgtagaagcatcttctaattcaac |
46638234 |
T |
|
| Q |
302 |
cgactgatattttggttgtttcatttt---cttcaatagttttccttcggaaagtctattggtatcaat |
367 |
Q |
| |
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| | ||||||| ||||||| ||| |||||||||||||||||| ||| ||||||||||||||| |
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| T |
46638233 |
aggcagatatttcaattgtttcgctttcagcttcaatagttttccttcagaatatctattggtatcaat |
46638165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 46651412 - 46651553
Alignment:
| Q |
18 |
cttttaataggaacagctgcatgattagaatcaccggatattactctctgattgaattcatgttttatgatcctcttcattcgattatcaccaaacacag |
117 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| ||| ||||||| |||||||| ||| ||| | |||||||||| |||||||||| ||||||| |
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| T |
46651412 |
cttttaataggaacaactgcatgattagaatcacctgatcgtactctccaattgaattgatgcttttttatcctcttcagtcgattatcatcaaacacgt |
46651511 |
T |
|
| Q |
118 |
aagtgtgttgatttttctggctttcaaccatcttgtttggatca |
161 |
Q |
| |
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| | |||| |||||||||||| | ||||||||||||| |||| |
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| T |
46651512 |
aggcgtgt--atttttctggctattgaccatcttgtttgcatca |
46651553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 367
Target Start/End: Complemental strand, 46619653 - 46619447
Alignment:
| Q |
164 |
atcagttttgttaattttctgtttaccacatagcaccatcttagcttccaccattcttcgt-gaatcatcagttgaacagacgcctttactttctttcag |
262 |
Q |
| |
|
||||||||| || || |||| ||| |||||| || | |||||||||||||| ||| ||| ||||||||| ||||| || | || ||||||||| |||| |
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| T |
46619653 |
atcagttttattgatattctttttgtcacataccagcctcttagcttccacc-ttcctcgacgaatcatcaattgaagagccacccttactttctctcag |
46619555 |
T |
|
| Q |
263 |
aagattcgtagtcatcctagaagcatctcccaattcaaccgactgatattttggttgtttcatttt---cttcaatagttttccttcggaaagtctattg |
359 |
Q |
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|||| ||||||||| ||||||||||| | |||||||| | ||||||| |||||||| ||| |||||||||||||||||| |||||||||||| |
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| T |
46619554 |
aagaccagtagtcatcgtagaagcatcttctaattcaactggaagatatttcaattgtttcactttcagcttcaatagttttccttcagaaagtctattg |
46619455 |
T |
|
| Q |
360 |
gtatcaat |
367 |
Q |
| |
|
|||||||| |
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|
| T |
46619454 |
gtatcaat |
46619447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 367
Target Start/End: Original strand, 46175820 - 46176022
Alignment:
| Q |
168 |
gttttgttaattttctgtttaccacatagcaccatcttagcttccaccattcttcgtgaatcatcagttgaacagacgcctttactttctttcagaagat |
267 |
Q |
| |
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||||| || ||||||| ||| |||||| || |||||||||||||||||| || ||||||||||||||||| ||| | ||||||||| | ||||| |
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| T |
46175820 |
gttttattgattttctttttgtcacatatcagcatcttagcttccaccatcattggtgaatcatcagttgaagagaaatccttactttctctatgaagac |
46175919 |
T |
|
| Q |
268 |
tcgtagtcatcctagaagcatctcccaattcaaccgactgatattttggttgtttcatttt---cttcaatagttttccttcggaaagtctattggtatc |
364 |
Q |
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||||| || ||| ||||||| | ||||||| | | ||| ||| ||||||||| ||| ||||||||||||| || ||||||||||||||||| |
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| T |
46175920 |
cggtagtagtcgtaggagcatcttctgattcaactggcggatgtttcagttgtttcaatttcagcttcaatagttttatgtcagaaagtctattggtatc |
46176019 |
T |
|
| Q |
365 |
aat |
367 |
Q |
| |
|
||| |
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|
| T |
46176020 |
aat |
46176022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 15768641 - 15768790
Alignment:
| Q |
18 |
cttttaataggaacagctgcatgattagaatcaccggatattactctctgattgaattcatgttttatgatcctcttcattcgattatcaccaaacacag |
117 |
Q |
| |
|
||||||||||||||| ||| || |||||| ||||| ||| |||||||| ||||||| | ||| |||||||||||||||| |||||||||| ||||| || |
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| T |
15768641 |
cttttaataggaacaactgtattattagagtcacctgatcttactctccgattgaactgatgctttatgatcctcttcagtcgattatcatcaaactcac |
15768740 |
T |
|
| Q |
118 |
aagtgtgttgatttttctggctttcaaccatcttgtttggatcactatca |
167 |
Q |
| |
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| | |||||||||| | ||| ||||||||||||| |||| |||| ||||| |
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| T |
15768741 |
aggcgtgttgatttgtttggttttcaaccatcttatttgcatcattatca |
15768790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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