View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2537_low_5 (Length: 346)
Name: NF2537_low_5
Description: NF2537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2537_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 46642615 - 46642935
Alignment:
| Q |
1 |
tctattggtatcaatgaccgtcaactttgtcgaattccgcataatgcttttagacatatccttgctatgttttacattccttgtataactttgcccttta |
100 |
Q |
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| T |
46642615 |
tctattggtatcaatgaccgtcaactttgtcgaattccgcttaatgcttttagacatatccttgctatgttttacattccttgtataactttgcccttca |
46642714 |
T |
|
| Q |
101 |
tcgtttacaccagcagcatctggctcaactttacgaactgaattaacaggcacaaatttcaaatccctgaaatcagatggctttcctttatgcaccaaac |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642715 |
tcgtttataccagcagcatctggctcaactttacgaactgaattaacaggcacaaatttcaaatccctgaaatcagatggctttcctttatgcaccaaac |
46642814 |
T |
|
| Q |
201 |
tggtatcaatacccattaattttatatgatctttattgtaggtaaaagatcggggcttgaggtaacattgacgatgatcatccgataaatcatcttcatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642815 |
tggtatcaatacccattaattttatatgatctttattgtaggtaaaagatcggggcttgaggtaacattgacgatgatcatccgataaatcatcttcatt |
46642914 |
T |
|
| Q |
301 |
tgttcccttttctggctgttc |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
46642915 |
tgttcccttttctggctgttc |
46642935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 109 - 315
Target Start/End: Original strand, 46176101 - 46176308
Alignment:
| Q |
109 |
accagcagcatctggctcaactttacgaactgaattaacaggcacaaatttcaaatccctgaaatcagatggctttcctttatgcaccaaactggtatca |
208 |
Q |
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| T |
46176101 |
accagcagcatctacatcaacttcacacactgaatttacaagcacatatttcaatacccttagatcagatggctttccgccatgcaccaaactggtatca |
46176200 |
T |
|
| Q |
209 |
atacccattaattttatatgatctttattgtagg-taaaagatcggggcttgaggtaacattgacgatgatcatccgataaatcatcttcatttgttccc |
307 |
Q |
| |
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||| |||| ||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| || ||||||||||||||||||| |||| |
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| T |
46176201 |
ataaccatgaattttatatgatctttattgtaggttagcagatttgggcttgaggtaacattgacgatgatcgtcagataaatcatcttcatttgatccc |
46176300 |
T |
|
| Q |
308 |
ttttctgg |
315 |
Q |
| |
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|||||||| |
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| T |
46176301 |
ttttctgg |
46176308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 20 - 313
Target Start/End: Complemental strand, 46630353 - 46630060
Alignment:
| Q |
20 |
gtcaactttgtcgaattccgcataatgcttttagacatatccttgctatgttttacattccttgtataactttgccctttatcgtttacaccagcagcat |
119 |
Q |
| |
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|||||||||||||||||| | | ||| ||||||||| |||||||||||| ||||| ||||| |||| | |||||||||| ||| ||||||||||| |
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| T |
46630353 |
gtcaactttgtcgaattctgttttatgtttttagacaaatccttgctatggtttactttcctcatatatttgtgccctttatattttttaccagcagcat |
46630254 |
T |
|
| Q |
120 |
ctggctcaactttacgaactgaattaacaggcacaaatttcaaatccctgaaatcagatggctttcctttatgcaccaaactggtatcaatacccattaa |
219 |
Q |
| |
|
|| |||||||||| | |||||||| ||||||| ||||||| ||||| | ||||||||||||||| | |||||||||||| | |||| || |||| || |
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| T |
46630253 |
ctacatcaactttactcaatgaattaataggcacatatttcaattcccttagatcagatggctttccgtcatgcaccaaactagcatcagtaaccatgaa |
46630154 |
T |
|
| Q |
220 |
ttttatatgatctttattgtaggtaaaagatcggggcttgaggtaacattgacgatgatcatccgataaatcatcttcatttgttcccttttct |
313 |
Q |
| |
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||| || ||||||||| |||| | | ||||||| ||||||||||||||||| |||||||| || |||||||||| | |||||| || ||||||| |
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| T |
46630153 |
tttgatgtgatctttactgtaagaagaagatcgaggcttgaggtaacattggcgatgatcgtcagataaatcatgtccatttgatctcttttct |
46630060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 151 - 317
Target Start/End: Complemental strand, 46638044 - 46637878
Alignment:
| Q |
151 |
cacaaatttcaaatccctgaaatcagatggctttcctttatgcaccaaactggtatcaatacccattaattttatatgatctttattgtaggtaaaagat |
250 |
Q |
| |
|
|||| ||||||| ||||| ||| |||||| |||||| |||||||||||||||||||||| ||| ||||| |||||||||||| |||| ||| |||| |
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| T |
46638044 |
cacagatttcaattcccttaaagcagatgactttccaccatgcaccaaactggtatcaataaccaagaatttgatatgatctttactgtaagtagaagac |
46637945 |
T |
|
| Q |
251 |
cggggcttgaggtaacattgacgatgatcatccgataaatcatcttcatttgttcccttttctggct |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| || || |||||||||||||||| ||| |||||||||| |
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| T |
46637944 |
cggggcttgaggtaacattgacgatgatcgtcagacaaatcatcttcatttgatccattttctggct |
46637878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 124 - 312
Target Start/End: Complemental strand, 46619365 - 46619177
Alignment:
| Q |
124 |
ctcaactttacgaactgaattaacaggcacaaatttcaaatccctgaaatcagatggctttcctttatgcaccaaactggtatcaatacccattaatttt |
223 |
Q |
| |
|
|||||||||| | || ||||||||||||||| ||||||| ||||| ||| |||||| |||||| |||||||||||||||||||||| |||| ||||| |
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| T |
46619365 |
ctcaactttaggcaccgaattaacaggcacagatttcaattcccttaaagcagatgactttccaccatgcaccaaactggtatcaataaccatgaatttg |
46619266 |
T |
|
| Q |
224 |
atatgatctttattgtaggtaaaagatcggggcttgaggtaacattgacgatgatcatccgataaatcatcttcatttgttcccttttc |
312 |
Q |
| |
|
|||||||||||| |||| ||| |||||||||||||||||||||| | |||||||| | || | |||||||||||||| ||| ||||| |
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| T |
46619265 |
atatgatctttactgtaagtagaagatcggggcttgaggtaacaatagcgatgatccttagacagatcatcttcatttgatccattttc |
46619177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 46176008 - 46176093
Alignment:
| Q |
1 |
tctattggtatcaatgaccgtcaactttgtcgaattccgcataatgcttttagacatatccttgctatgttttacattccttgtat |
86 |
Q |
| |
|
||||||||||||||| || | ||||||||| | |||||| |||||||||||||||||||||||| ||| ||||| ||||| |||| |
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| T |
46176008 |
tctattggtatcaataactgccaactttgttgcattccgtttaatgcttttagacatatccttgccatggtttactttcctcgtat |
46176093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 46638179 - 46638093
Alignment:
| Q |
1 |
tctattggtatcaatgaccgtcaactttgtcgaattccgcataatgcttttagacatatccttgctatgttttacattccttgtata |
87 |
Q |
| |
|
||||||||||||||| || || ||||||||||| ||| | |||||||||||| | |||||||||||| ||||| ||||| ||||| |
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|
| T |
46638179 |
tctattggtatcaattactgttaactttgtcgacttctgtttaatgcttttaggcgcatccttgctatggtttaccttcctcgtata |
46638093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 48 - 316
Target Start/End: Original strand, 15769080 - 15769348
Alignment:
| Q |
48 |
ttttagacatatccttgctatgttttacattccttgtataactttgccctttatcgtttacaccagcagcatctggctcaactttacgaactgaattaac |
147 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||| ||||| || ||||||||| ||| ||||||||||||| |||||||||| ||||||||||| |
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| T |
15769080 |
ttttagacatatccgtgctatggtttactttcctcgtatattttcgccctttatattttttaccagcagcatctacatcaactttactcactgaattaac |
15769179 |
T |
|
| Q |
148 |
aggcacaaatttcaaatccctgaaatcagatggctttcctttatgcaccaaactggtatcaatacccattaattttatatgatctttattgtaggtaaaa |
247 |
Q |
| |
|
||||| | ||||||| ||||| | ||||||||| ||||| | | |||||||||||||||||| |||| || |||||| |||| |||||||| ||| || |
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|
| T |
15769180 |
aggcatagatttcaactcccttagatcagatggatttccgccacgtaccaaactggtatcaataaccatgaactttatacgatcattattgtaagtagaa |
15769279 |
T |
|
| Q |
248 |
gatcggggcttgaggtaacattgacgatgatcatccgataaatcatcttcatttgttcccttttctggc |
316 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||| |||||||||||||| ||||||||||||| |
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|
| T |
15769280 |
gatcggggcttgaggtaacattggcgatgatcatcagatacatcatcttcatttgatcccttttctggc |
15769348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 23 - 313
Target Start/End: Original strand, 18375734 - 18376024
Alignment:
| Q |
23 |
aactttgtcgaattccgcataatgcttttagacatatccttgctatgttttacattccttgtataactttgccctttatcgtttacaccagcagcatctg |
122 |
Q |
| |
|
||||||||||||||| | |||||||||||||| ||||||||||||| ||||| ||||| ||||| | |||||||||| ||| ||||| ||||||| |
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| T |
18375734 |
aactttgtcgaattctgtttaatgcttttagacgtatccttgctatggtttactttcctcgtatatttgtgccctttatattttttaccagaagcatcta |
18375833 |
T |
|
| Q |
123 |
gctcaactttacgaactgaattaacaggcacaaatttcaaatccctgaaatcagatggctttcctttatgcaccaaactggtatcaatacccattaattt |
222 |
Q |
| |
|
|||||||||| |||||||||| |||| || ||||||| ||||| | |||||||||||||| | |||||||||||||| ||| || |||| ||||| |
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|
| T |
18375834 |
catcaactttactcactgaattaataggctcatatttcaattcccttagatcagatggctttctgtcatgcaccaaactggcttcagtaaccatgaattt |
18375933 |
T |
|
| Q |
223 |
tatatgatctttattgtaggtaaaagatcggggcttgaggtaacattgacgatgatcatccgataaatcatcttcatttgttcccttttct |
313 |
Q |
| |
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|| ||||||||| |||| ||| ||||||| ||||||||||||||||| |||||||| || |||||||||| | |||||| ||| |||||| |
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| T |
18375934 |
catgtgatctttactgtaagtagaagatcgaggcttgaggtaacattggcgatgatcgtcagataaatcatgtccatttgatcctttttct |
18376024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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