View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2537_low_6 (Length: 285)
Name: NF2537_low_6
Description: NF2537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2537_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 274
Target Start/End: Complemental strand, 47292929 - 47292669
Alignment:
| Q |
14 |
catacacaacgatttcaccccaagcctctcaatcaaactagtaataacctcgtcatcgcaaagtaagtttgatatgaaaccctcttctttcagtttgtgt |
113 |
Q |
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| T |
47292929 |
catacacaatgatttcaccccaagcctctcaatcaaactagtaataacctcgtcatcgcaaagtaagtttgatatgaaaccctcttctttcagtttgtgt |
47292830 |
T |
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| Q |
114 |
gtacttgatagacatcatctccatttatgaagttttcaatatcttctcttttctttcttgtagaagaagacaccttatccagccaatttgaataaatatt |
213 |
Q |
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| T |
47292829 |
gtacttgatagacatcatctccatttatgaagttttcaatatcttctcttctctttcttgtagaagaagataccttatccagccaatttgaataaatatt |
47292730 |
T |
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| Q |
214 |
gtcctgcaaagcagtcatcatttcactatgatcttcgatttgttcacctctactacccttt |
274 |
Q |
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| T |
47292729 |
gtcctgcaaagcagtcatcatttcactatgatcttcgatttgttcacctctactacccttt |
47292669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 248
Target Start/End: Original strand, 56209298 - 56209461
Alignment:
| Q |
81 |
tttgatatgaaaccctcttctttcagtttgtgtgtacttgatagacatcatctccatttatgaagttttcaatatctt-ctcttttctttcttgtagaag |
179 |
Q |
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| T |
56209298 |
tttgatatgaaaccctcttcttccagtctatttg--cttgatagacaccatc---atttatgaaattgtcaatatctttctattttctttcctcttgcag |
56209392 |
T |
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| Q |
180 |
aagacaccttatccagccaatttgaataaatattgtcctgcaaagcagtcatcatttcactatgatctt |
248 |
Q |
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| T |
56209393 |
aagagactttatcgagccaatttgaatagatattatccaacaatgcagtcagcatctcacgatgttctt |
56209461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 45862519 - 45862594
Alignment:
| Q |
174 |
tagaagaagacaccttatccagccaatttgaataaatattgtcctgcaaagcagtcatcatttcactatgatcttc |
249 |
Q |
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| T |
45862519 |
tagaagaagagactttatccagccaatttgaatagatattatccagtaatgcagtcagcatctcacgatgatcttc |
45862594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 45862404 - 45862444
Alignment:
| Q |
135 |
catttatgaagttttcaatatcttctcttttctttcttgta |
175 |
Q |
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| T |
45862404 |
catttatgaagttctcaacatcttctcttttctttcctgta |
45862444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 24 - 263
Target Start/End: Original strand, 7962403 - 7962646
Alignment:
| Q |
24 |
gatttcaccccaagcctctcaatcaaactagtaataacctcgtcatcgca---aagtaagtttgatatgaaaccctcttctttcagtttgtgtgtacttg |
120 |
Q |
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| T |
7962403 |
gatttcaccccaaatctcttattcaaactagtaataaccttgctatcgccgtcaaccatgtttgatacgaaaccctcttctttcagtttgtatactccag |
7962502 |
T |
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| Q |
121 |
atagac-atcatctccatttatgaagttttcaatatcttctcttttctttcttgtagaagaagacaccttatccagccaatttgaataaatattgtcctg |
219 |
Q |
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| T |
7962503 |
ataaaccatctccttcatttatgaaattttcaatatcttcttttttctttccaatagaagaagagaccttatccagccaatttgaataaatactgtcctg |
7962602 |
T |
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| Q |
220 |
caaagcagtcatcatttcactatgatcttcgatttgttcacctc |
263 |
Q |
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| T |
7962603 |
caatgcagtcgtcgtctcacgataatctttgatttgttgacctc |
7962646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 215
Target Start/End: Original strand, 35803123 - 35803256
Alignment:
| Q |
77 |
taagtttgatatgaaaccctcttctttcagtttgtgtgtacttgatagacatcatctccatttatgaagttttcaatatcttctcttttctttcttgtag |
176 |
Q |
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|||| |||||||||||||||||||||||||||| | | | | |||| ||| | || |||||||||||||| || |||||||||||||| | | ||| |
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| T |
35803123 |
taagcttgatatgaaaccctcttctttcagtttatct--aatcgataaacaccttc---atttatgaagttttgaacttcttctcttttcttccctctag |
35803217 |
T |
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| Q |
177 |
aagaagacaccttatccagccaatttgaataaatattgt |
215 |
Q |
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| T |
35803218 |
aagaagagactttatccagccaatttgaatagatattgt |
35803256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 35854242 - 35854157
Alignment:
| Q |
24 |
gatttcaccccaagcctctcaatcaaactagtaataacctcgtcatcgcaaagtaagtttgatatgaaaccctcttctttcagttt |
109 |
Q |
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||||| |||||||||||||| |||| ||| |||||||| ||||| | | |||| |||||||||||||||||||||||||||| |
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| T |
35854242 |
gatttaaccccaagcctctccttcaagagagttataacctcatcatcatacactaagcttgatatgaaaccctcttctttcagttt |
35854157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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