View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2537_low_8 (Length: 262)
Name: NF2537_low_8
Description: NF2537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2537_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 26981004 - 26981239
Alignment:
| Q |
15 |
ttatactcagaagatgtaggccggtatgaggagcaaaagttgaagactgtatagttttggagctccattttaatattagttcagggnnnnnnntacacaa |
114 |
Q |
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| T |
26981004 |
ttatactcagaagatgtaggctggtatgaggagcaaaagttgaagactgtatagttttggagctccattttaatattagttcagggaaaaaaatacacaa |
26981103 |
T |
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| Q |
115 |
atagaagcatgttgtctgttgtttgcaaatctattagaatgtgttacaaaataggcattcatttcaaattactaccacttgcatttac-aatacatttat |
213 |
Q |
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| T |
26981104 |
atagaagcatgttgtctgttgtttgcaaatctattagaatgtgttacaaaataggcattcatttcaaattactaccacctgcatttacaaatacatttat |
26981203 |
T |
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| Q |
214 |
tcaatgtagacacaattcagggcagagaagttactg |
249 |
Q |
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| T |
26981204 |
tcaatgtagacacaattcagggcagagaagttactg |
26981239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 27000387 - 27000317
Alignment:
| Q |
15 |
ttatactcagaagatgtaggccggtatgaggagcaaaagttgaagactgtatagttttggagctccatttt |
85 |
Q |
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| T |
27000387 |
ttatactcggaagatataagccagtatgagctgcaaaagttgaagactgcatagtttaggagttccatttt |
27000317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 26986181 - 26986143
Alignment:
| Q |
47 |
gcaaaagttgaagactgtatagttttggagctccatttt |
85 |
Q |
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| T |
26986181 |
gcaaaaattgaagactgcatagttttggagctccatttt |
26986143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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